Strain Fitness in Pseudomonas putida KT2440 around PP_0200

Experiment: 2,6-diaminopimelic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0198 and PP_0199 are separated by 48 nucleotidesPP_0199 and PP_0200 are separated by 8 nucleotidesPP_0200 and PP_0201 are separated by 65 nucleotidesPP_0201 and PP_5432 are separated by 61 nucleotidesPP_5432 and PP_5433 are separated by 69 nucleotides PP_0198: PP_0198 - putative transporter, at 248,420 to 249,052 _0198 PP_0199: PP_0199 - putative membrane protease family, stomatin, at 249,101 to 249,847 _0199 PP_0200: PP_0200 - putative membrane bound peptidase, nefD, at 249,856 to 251,202 _0200 PP_0201: PP_0201 - conserved protein of unknown function, at 251,268 to 251,759 _0201 PP_5432: PP_5432 - conserved protein of unknown function, at 251,821 to 252,063 _5432 PP_5433: PP_5433 - putative NADH:ubiquinone oxidoreductase subunit 2, at 252,133 to 252,771 _5433 Position (kb) 249 250 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 248.864 kb on + strand, within PP_0198at 248.864 kb on + strand, within PP_0198at 248.865 kb on - strand, within PP_0198at 248.865 kb on - strand, within PP_0198at 248.919 kb on - strand, within PP_0198at 249.062 kb on + strandat 249.063 kb on - strandat 249.102 kb on + strandat 249.102 kb on + strandat 249.103 kb on - strandat 249.137 kb on + strandat 249.199 kb on + strand, within PP_0199at 249.199 kb on + strandat 249.199 kb on + strand, within PP_0199at 249.200 kb on - strand, within PP_0199at 249.200 kb on - strand, within PP_0199at 249.200 kb on - strand, within PP_0199at 249.201 kb on + strand, within PP_0199at 249.201 kb on + strandat 249.202 kb on - strand, within PP_0199at 249.202 kb on - strand, within PP_0199at 249.202 kb on - strand, within PP_0199at 249.425 kb on + strand, within PP_0199at 249.425 kb on + strand, within PP_0199at 249.425 kb on + strand, within PP_0199at 249.647 kb on + strand, within PP_0199at 249.664 kb on + strand, within PP_0199at 249.664 kb on + strand, within PP_0199at 249.664 kb on + strandat 249.664 kb on + strand, within PP_0199at 249.665 kb on - strand, within PP_0199at 249.665 kb on - strand, within PP_0199at 249.665 kb on - strand, within PP_0199at 249.680 kb on + strand, within PP_0199at 249.681 kb on - strand, within PP_0199at 249.772 kb on - strand, within PP_0199at 249.925 kb on + strandat 249.925 kb on + strandat 250.341 kb on - strand, within PP_0200at 250.341 kb on - strand, within PP_0200at 250.341 kb on - strand, within PP_0200at 250.362 kb on + strand, within PP_0200at 250.362 kb on + strandat 250.363 kb on - strand, within PP_0200at 250.363 kb on - strand, within PP_0200at 250.451 kb on - strand, within PP_0200at 250.724 kb on + strand, within PP_0200at 250.785 kb on + strand, within PP_0200at 250.870 kb on - strand, within PP_0200at 250.870 kb on - strand, within PP_0200at 250.870 kb on - strand, within PP_0200at 250.887 kb on + strand, within PP_0200at 250.887 kb on + strand, within PP_0200at 250.888 kb on - strand, within PP_0200at 250.888 kb on - strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.889 kb on + strand, within PP_0200at 250.890 kb on - strand, within PP_0200at 250.890 kb on - strand, within PP_0200at 250.890 kb on - strand, within PP_0200at 250.931 kb on + strand, within PP_0200at 250.931 kb on + strand, within PP_0200at 250.932 kb on - strand, within PP_0200at 250.932 kb on - strand, within PP_0200at 251.073 kb on - strandat 251.226 kb on - strandat 251.229 kb on - strandat 251.352 kb on + strand, within PP_0201at 251.352 kb on + strand, within PP_0201at 251.353 kb on - strand, within PP_0201at 251.353 kb on - strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.466 kb on + strand, within PP_0201at 251.467 kb on - strand, within PP_0201at 251.467 kb on - strand, within PP_0201at 251.467 kb on - strand, within PP_0201at 251.467 kb on - strand, within PP_0201at 251.614 kb on - strand, within PP_0201at 251.614 kb on - strand, within PP_0201at 251.664 kb on + strand, within PP_0201at 251.665 kb on - strand, within PP_0201at 251.715 kb on + strandat 251.715 kb on + strandat 251.716 kb on - strandat 251.716 kb on - strandat 251.716 kb on - strandat 251.716 kb on - strandat 251.889 kb on + strand, within PP_5432at 252.101 kb on + strandat 252.101 kb on + strandat 252.101 kb on + strandat 252.102 kb on - strandat 252.102 kb on - strandat 252.102 kb on - strandat 252.102 kb on - strandat 252.119 kb on - strandat 252.199 kb on + strand, within PP_5433at 252.199 kb on + strand, within PP_5433at 252.200 kb on - strand, within PP_5433

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2,6-diaminopimelic (N)
remove
248,864 + PP_0198 0.70 -0.2
248,864 + PP_0198 0.70 -0.2
248,865 - PP_0198 0.70 +1.1
248,865 - PP_0198 0.70 -1.1
248,919 - PP_0198 0.79 -0.0
249,062 + +2.9
249,063 - -0.5
249,102 + -1.2
249,102 + +2.5
249,103 - -1.7
249,137 + -1.0
249,199 + PP_0199 0.13 +0.8
249,199 + +2.7
249,199 + PP_0199 0.13 -0.8
249,200 - PP_0199 0.13 -0.8
249,200 - PP_0199 0.13 -0.6
249,200 - PP_0199 0.13 -3.1
249,201 + PP_0199 0.13 +0.1
249,201 + +2.1
249,202 - PP_0199 0.14 -0.8
249,202 - PP_0199 0.14 +0.8
249,202 - PP_0199 0.14 +0.3
249,425 + PP_0199 0.43 +0.6
249,425 + PP_0199 0.43 -0.6
249,425 + PP_0199 0.43 +0.3
249,647 + PP_0199 0.73 +1.5
249,664 + PP_0199 0.75 +1.7
249,664 + PP_0199 0.75 +0.7
249,664 + +3.7
249,664 + PP_0199 0.75 +4.4
249,665 - PP_0199 0.76 +0.2
249,665 - PP_0199 0.76 -0.9
249,665 - PP_0199 0.76 +1.8
249,680 + PP_0199 0.78 -0.2
249,681 - PP_0199 0.78 -2.0
249,772 - PP_0199 0.90 +0.5
249,925 + -0.2
249,925 + -1.5
250,341 - PP_0200 0.36 -0.0
250,341 - PP_0200 0.36 +2.7
250,341 - PP_0200 0.36 +0.2
250,362 + PP_0200 0.38 -0.0
250,362 + +2.7
250,363 - PP_0200 0.38 -1.4
250,363 - PP_0200 0.38 +0.9
250,451 - PP_0200 0.44 -0.2
250,724 + PP_0200 0.64 -1.4
250,785 + PP_0200 0.69 +1.0
250,870 - PP_0200 0.75 -2.4
250,870 - PP_0200 0.75 +0.6
250,870 - PP_0200 0.75 -1.1
250,887 + PP_0200 0.77 -0.7
250,887 + PP_0200 0.77 -2.3
250,888 - PP_0200 0.77 +2.5
250,888 - PP_0200 0.77 -1.0
250,889 + PP_0200 0.77 +2.4
250,889 + PP_0200 0.77 -1.6
250,889 + PP_0200 0.77 +1.7
250,889 + PP_0200 0.77 -1.4
250,889 + PP_0200 0.77 +1.7
250,889 + PP_0200 0.77 -1.0
250,889 + PP_0200 0.77 -0.7
250,889 + PP_0200 0.77 -0.8
250,889 + PP_0200 0.77 -1.0
250,890 - PP_0200 0.77 +5.3
250,890 - PP_0200 0.77 +0.4
250,890 - PP_0200 0.77 -0.8
250,931 + PP_0200 0.80 -0.4
250,931 + PP_0200 0.80 -0.9
250,932 - PP_0200 0.80 +0.0
250,932 - PP_0200 0.80 +0.4
251,073 - -2.2
251,226 - -0.9
251,229 - +0.6
251,352 + PP_0201 0.17 -0.7
251,352 + PP_0201 0.17 +2.2
251,353 - PP_0201 0.17 -2.3
251,353 - PP_0201 0.17 +1.9
251,466 + PP_0201 0.40 -0.6
251,466 + PP_0201 0.40 -1.0
251,466 + PP_0201 0.40 -0.7
251,466 + PP_0201 0.40 -1.6
251,466 + PP_0201 0.40 +0.6
251,466 + PP_0201 0.40 -1.2
251,467 - PP_0201 0.40 +2.7
251,467 - PP_0201 0.40 -0.3
251,467 - PP_0201 0.40 -0.2
251,467 - PP_0201 0.40 -0.8
251,614 - PP_0201 0.70 -1.2
251,614 - PP_0201 0.70 +2.0
251,664 + PP_0201 0.80 -1.2
251,665 - PP_0201 0.81 +1.0
251,715 + -1.3
251,715 + +1.5
251,716 - +1.7
251,716 - +0.2
251,716 - -0.0
251,716 - -2.0
251,889 + PP_5432 0.28 +1.1
252,101 + -0.1
252,101 + -1.6
252,101 + -1.2
252,102 - -2.0
252,102 - -0.1
252,102 - -1.6
252,102 - -0.1
252,119 - -0.4
252,199 + PP_5433 0.10 -0.1
252,199 + PP_5433 0.10 +1.8
252,200 - PP_5433 0.10 -2.1

Or see this region's nucleotide sequence