Experiment: 2,6-diaminopimelic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0623 and PP_0624 overlap by 4 nucleotides PP_0624 and PP_0625 are separated by 249 nucleotides
PP_0623: PP_0623 - 23S rRNA pseudouridine(1911,1915,1917) synthase, at 728,512 to 729,474
_0623
PP_0624: PP_0624 - Uncharacterized protein YfiH, at 729,471 to 730,211
_0624
PP_0625: PP_0625 - Chaperone protein ClpB, at 730,461 to 733,025
_0625
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 728.771 kb on - strand, within PP_0623 at 729.019 kb on + strand, within PP_0623 at 729.019 kb on + strand, within PP_0623 at 729.266 kb on - strand, within PP_0623 at 729.283 kb on - strand, within PP_0623 at 730.056 kb on - strand, within PP_0624 at 730.056 kb on - strand, within PP_0624 at 730.057 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.059 kb on + strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.060 kb on - strand, within PP_0624 at 730.108 kb on - strand, within PP_0624 at 730.152 kb on + strand at 730.152 kb on + strand at 730.210 kb on - strand at 730.280 kb on + strand at 730.281 kb on - strand at 730.281 kb on - strand at 730.281 kb on - strand at 730.377 kb on + strand at 730.377 kb on + strand at 730.378 kb on - strand at 730.378 kb on - strand at 730.381 kb on + strand at 730.381 kb on + strand at 730.381 kb on + strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.382 kb on - strand at 730.383 kb on + strand at 730.383 kb on + strand at 730.384 kb on - strand at 730.408 kb on + strand at 730.408 kb on + strand at 730.446 kb on - strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.455 kb on + strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.456 kb on - strand at 730.468 kb on + strand at 730.477 kb on + strand at 730.681 kb on + strand at 730.950 kb on + strand, within PP_0625 at 730.950 kb on + strand, within PP_0625 at 730.951 kb on - strand, within PP_0625 at 730.951 kb on - strand, within PP_0625 at 731.194 kb on + strand, within PP_0625 at 731.195 kb on - strand, within PP_0625 at 731.195 kb on - strand, within PP_0625 at 731.211 kb on + strand, within PP_0625
Per-strain Table
Position Strand Gene LocusTag Fraction 2,6-diaminopimelic (N) remove 728,771 - PP_0623 0.27 -0.0 729,019 + PP_0623 0.53 -0.6 729,019 + PP_0623 0.53 -1.2 729,266 - PP_0623 0.78 +0.9 729,283 - PP_0623 0.80 -0.7 730,056 - PP_0624 0.79 -1.4 730,056 - PP_0624 0.79 -0.7 730,057 + PP_0624 0.79 -0.2 730,059 + PP_0624 0.79 +0.4 730,059 + PP_0624 0.79 +0.6 730,059 + PP_0624 0.79 -0.5 730,059 + PP_0624 0.79 -0.2 730,059 + PP_0624 0.79 -0.8 730,060 - PP_0624 0.79 -0.7 730,060 - PP_0624 0.79 -1.7 730,060 - PP_0624 0.79 +0.9 730,060 - PP_0624 0.79 +0.6 730,060 - PP_0624 0.79 -0.8 730,108 - PP_0624 0.86 -0.2 730,152 + -0.8 730,152 + +0.6 730,210 - -0.3 730,280 + +0.9 730,281 - +1.1 730,281 - -0.5 730,281 - -1.3 730,377 + +0.3 730,377 + -1.2 730,378 - -0.8 730,378 - +0.6 730,381 + +0.8 730,381 + +0.3 730,381 + -1.3 730,382 - -0.3 730,382 - +0.2 730,382 - -0.6 730,383 + +0.8 730,383 + +0.1 730,384 - -0.8 730,408 + -0.7 730,408 + -2.1 730,446 - +0.1 730,455 + +0.0 730,455 + -2.0 730,455 + +0.3 730,455 + +3.7 730,455 + +0.9 730,456 - -1.4 730,456 - +0.6 730,456 - -0.5 730,456 - +1.2 730,456 - +1.6 730,456 - +1.4 730,456 - +1.1 730,456 - -0.7 730,468 + -0.3 730,477 + +0.6 730,681 + +3.7 730,950 + PP_0625 0.19 -0.1 730,950 + PP_0625 0.19 +1.7 730,951 - PP_0625 0.19 -1.1 730,951 - PP_0625 0.19 +2.7 731,194 + PP_0625 0.29 +0.7 731,195 - PP_0625 0.29 -2.0 731,195 - PP_0625 0.29 +1.8 731,211 + PP_0625 0.29 +0.2
Or see this region's nucleotide sequence