Strain Fitness in Pseudomonas putida KT2440 around PP_5149

Experiment: DL-3-Aminoisobutyric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5147 and PP_5148 are separated by 130 nucleotidesPP_5148 and PP_5149 are separated by 147 nucleotidesPP_5149 and PP_5150 are separated by 133 nucleotidesPP_5150 and PP_5151 are separated by 104 nucleotides PP_5147: PP_5147 - Hydrolase, haloacid dehalogenase-like family, at 5,873,296 to 5,873,952 _5147 PP_5148: PP_5148 - conserved membrane protein of unknown function, at 5,874,083 to 5,874,508 _5148 PP_5149: PP_5149 - threonine deaminase, at 5,874,656 to 5,876,170 _5149 PP_5150: PP_5150 - Ribose-5-phosphate isomerase A, at 5,876,304 to 5,876,978 _5150 PP_5151: PP_5151 - conserved exported protein of unknown function, at 5,877,083 to 5,877,985 _5151 Position (kb) 5874 5875 5876 5877Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5873.719 kb on + strand, within PP_5147at 5873.720 kb on - strand, within PP_5147at 5873.730 kb on + strand, within PP_5147at 5873.730 kb on + strand, within PP_5147at 5873.734 kb on - strand, within PP_5147at 5873.734 kb on - strand, within PP_5147at 5873.739 kb on + strand, within PP_5147at 5873.739 kb on + strand, within PP_5147at 5873.740 kb on - strand, within PP_5147at 5873.740 kb on - strand, within PP_5147at 5873.740 kb on - strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.741 kb on + strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.742 kb on - strand, within PP_5147at 5873.818 kb on + strand, within PP_5147at 5873.818 kb on + strand, within PP_5147at 5873.819 kb on - strand, within PP_5147at 5873.819 kb on - strand, within PP_5147at 5873.819 kb on - strand, within PP_5147at 5873.824 kb on + strand, within PP_5147at 5873.824 kb on + strand, within PP_5147at 5873.825 kb on - strand, within PP_5147at 5873.825 kb on - strand, within PP_5147at 5874.034 kb on + strandat 5874.034 kb on + strandat 5874.056 kb on + strandat 5874.057 kb on - strandat 5874.157 kb on + strand, within PP_5148at 5874.170 kb on + strand, within PP_5148at 5874.170 kb on + strand, within PP_5148at 5874.171 kb on - strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.238 kb on + strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.239 kb on - strand, within PP_5148at 5874.296 kb on + strand, within PP_5148at 5874.296 kb on + strand, within PP_5148at 5874.297 kb on - strand, within PP_5148at 5874.297 kb on - strand, within PP_5148at 5874.387 kb on + strand, within PP_5148at 5874.388 kb on - strand, within PP_5148at 5874.523 kb on + strandat 5874.524 kb on - strandat 5874.524 kb on - strandat 5874.576 kb on + strandat 5874.577 kb on - strandat 5874.603 kb on - strandat 5874.603 kb on - strandat 5874.644 kb on + strandat 5874.645 kb on - strandat 5874.675 kb on + strandat 5874.937 kb on + strand, within PP_5149at 5874.937 kb on + strand, within PP_5149at 5874.937 kb on + strand, within PP_5149at 5874.938 kb on - strand, within PP_5149at 5874.946 kb on + strand, within PP_5149at 5874.946 kb on + strand, within PP_5149at 5874.947 kb on - strand, within PP_5149at 5875.067 kb on - strand, within PP_5149at 5875.067 kb on - strand, within PP_5149at 5875.067 kb on - strand, within PP_5149at 5875.095 kb on + strand, within PP_5149at 5875.127 kb on - strand, within PP_5149at 5875.293 kb on + strand, within PP_5149at 5875.293 kb on + strand, within PP_5149at 5875.294 kb on - strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.295 kb on + strand, within PP_5149at 5875.296 kb on - strand, within PP_5149at 5875.305 kb on + strand, within PP_5149at 5875.368 kb on + strand, within PP_5149at 5875.368 kb on + strand, within PP_5149at 5875.369 kb on - strand, within PP_5149at 5875.369 kb on - strand, within PP_5149at 5875.402 kb on + strand, within PP_5149at 5875.442 kb on - strand, within PP_5149at 5875.575 kb on - strand, within PP_5149at 5875.597 kb on - strand, within PP_5149at 5875.597 kb on - strand, within PP_5149at 5875.597 kb on - strand, within PP_5149at 5875.605 kb on + strand, within PP_5149at 5875.606 kb on - strand, within PP_5149at 5875.734 kb on + strand, within PP_5149at 5875.734 kb on + strand, within PP_5149at 5875.735 kb on - strand, within PP_5149at 5875.746 kb on + strand, within PP_5149at 5875.746 kb on + strand, within PP_5149at 5875.782 kb on + strandat 5876.002 kb on + strand, within PP_5149at 5876.002 kb on + strand, within PP_5149at 5876.002 kb on + strand, within PP_5149at 5876.003 kb on - strand, within PP_5149at 5876.003 kb on - strand, within PP_5149at 5876.005 kb on - strand, within PP_5149at 5876.031 kb on - strandat 5876.127 kb on + strandat 5876.128 kb on - strandat 5876.157 kb on + strandat 5876.158 kb on - strandat 5876.158 kb on - strandat 5876.212 kb on + strandat 5876.224 kb on - strandat 5876.224 kb on - strandat 5876.259 kb on + strandat 5876.259 kb on + strandat 5876.260 kb on - strandat 5876.261 kb on + strandat 5876.261 kb on + strandat 5876.261 kb on + strandat 5876.264 kb on + strandat 5876.264 kb on + strandat 5877.004 kb on + strandat 5877.004 kb on + strandat 5877.004 kb on + strandat 5877.004 kb on + strandat 5877.011 kb on + strandat 5877.011 kb on + strandat 5877.044 kb on + strandat 5877.108 kb on + strandat 5877.108 kb on + strandat 5877.108 kb on + strandat 5877.108 kb on + strandat 5877.109 kb on - strandat 5877.109 kb on - strandat 5877.109 kb on - strandat 5877.135 kb on + strandat 5877.135 kb on + strandat 5877.136 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DL-3-Aminoisobutyric (N)
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5,873,719 + PP_5147 0.64 -1.1
5,873,720 - PP_5147 0.65 +1.5
5,873,730 + PP_5147 0.66 +0.1
5,873,730 + PP_5147 0.66 +0.6
5,873,734 - PP_5147 0.67 +0.2
5,873,734 - PP_5147 0.67 +0.1
5,873,739 + PP_5147 0.67 -0.3
5,873,739 + PP_5147 0.67 -0.6
5,873,740 - PP_5147 0.68 -0.2
5,873,740 - PP_5147 0.68 +0.5
5,873,740 - PP_5147 0.68 -0.6
5,873,741 + PP_5147 0.68 +0.9
5,873,741 + PP_5147 0.68 -0.0
5,873,741 + PP_5147 0.68 -0.4
5,873,741 + PP_5147 0.68 -0.3
5,873,742 - PP_5147 0.68 +0.8
5,873,742 - PP_5147 0.68 -1.2
5,873,742 - PP_5147 0.68 +1.4
5,873,742 - PP_5147 0.68 +1.0
5,873,818 + PP_5147 0.79 -0.5
5,873,818 + PP_5147 0.79 +0.3
5,873,819 - PP_5147 0.80 -0.2
5,873,819 - PP_5147 0.80 +0.6
5,873,819 - PP_5147 0.80 +0.6
5,873,824 + PP_5147 0.80 -0.6
5,873,824 + PP_5147 0.80 +0.8
5,873,825 - PP_5147 0.81 +0.6
5,873,825 - PP_5147 0.81 -0.3
5,874,034 + +1.1
5,874,034 + +0.9
5,874,056 + +0.4
5,874,057 - +0.9
5,874,157 + PP_5148 0.17 +0.5
5,874,170 + PP_5148 0.20 +0.9
5,874,170 + PP_5148 0.20 +0.4
5,874,171 - PP_5148 0.21 -1.3
5,874,238 + PP_5148 0.36 +0.4
5,874,238 + PP_5148 0.36 +1.2
5,874,238 + PP_5148 0.36 +0.0
5,874,238 + PP_5148 0.36 -0.8
5,874,239 - PP_5148 0.37 +0.2
5,874,239 - PP_5148 0.37 -0.3
5,874,239 - PP_5148 0.37 -0.6
5,874,239 - PP_5148 0.37 +0.7
5,874,239 - PP_5148 0.37 +0.3
5,874,296 + PP_5148 0.50 +0.9
5,874,296 + PP_5148 0.50 +0.5
5,874,297 - PP_5148 0.50 +0.6
5,874,297 - PP_5148 0.50 +0.2
5,874,387 + PP_5148 0.71 +0.7
5,874,388 - PP_5148 0.72 -0.3
5,874,523 + +1.1
5,874,524 - -0.8
5,874,524 - -0.3
5,874,576 + -0.1
5,874,577 - +0.8
5,874,603 - +1.5
5,874,603 - +0.5
5,874,644 + +0.0
5,874,645 - -0.4
5,874,675 + -0.3
5,874,937 + PP_5149 0.19 -0.6
5,874,937 + PP_5149 0.19 +0.1
5,874,937 + PP_5149 0.19 +0.3
5,874,938 - PP_5149 0.19 +0.1
5,874,946 + PP_5149 0.19 +0.2
5,874,946 + PP_5149 0.19 -0.2
5,874,947 - PP_5149 0.19 -0.3
5,875,067 - PP_5149 0.27 -0.3
5,875,067 - PP_5149 0.27 +0.5
5,875,067 - PP_5149 0.27 +0.8
5,875,095 + PP_5149 0.29 +0.1
5,875,127 - PP_5149 0.31 -0.2
5,875,293 + PP_5149 0.42 +0.2
5,875,293 + PP_5149 0.42 +0.3
5,875,294 - PP_5149 0.42 +0.9
5,875,295 + PP_5149 0.42 -2.4
5,875,295 + PP_5149 0.42 +0.1
5,875,295 + PP_5149 0.42 -0.3
5,875,295 + PP_5149 0.42 +0.3
5,875,295 + PP_5149 0.42 -0.4
5,875,295 + PP_5149 0.42 -0.2
5,875,296 - PP_5149 0.42 -0.3
5,875,305 + PP_5149 0.43 -0.3
5,875,368 + PP_5149 0.47 +0.6
5,875,368 + PP_5149 0.47 -0.6
5,875,369 - PP_5149 0.47 +1.5
5,875,369 - PP_5149 0.47 -0.5
5,875,402 + PP_5149 0.49 +0.6
5,875,442 - PP_5149 0.52 +0.1
5,875,575 - PP_5149 0.61 +0.3
5,875,597 - PP_5149 0.62 -0.2
5,875,597 - PP_5149 0.62 -0.3
5,875,597 - PP_5149 0.62 +0.5
5,875,605 + PP_5149 0.63 -0.3
5,875,606 - PP_5149 0.63 +0.6
5,875,734 + PP_5149 0.71 +0.4
5,875,734 + PP_5149 0.71 -0.6
5,875,735 - PP_5149 0.71 -0.7
5,875,746 + PP_5149 0.72 +0.2
5,875,746 + PP_5149 0.72 +1.5
5,875,782 + +0.2
5,876,002 + PP_5149 0.89 +0.5
5,876,002 + PP_5149 0.89 +0.7
5,876,002 + PP_5149 0.89 +1.5
5,876,003 - PP_5149 0.89 -0.0
5,876,003 - PP_5149 0.89 -0.2
5,876,005 - PP_5149 0.89 -0.6
5,876,031 - -0.7
5,876,127 + +2.5
5,876,128 - -0.1
5,876,157 + -0.8
5,876,158 - -0.8
5,876,158 - +0.5
5,876,212 + -0.5
5,876,224 - +0.4
5,876,224 - -0.5
5,876,259 + +0.2
5,876,259 + +0.9
5,876,260 - -1.1
5,876,261 + -0.5
5,876,261 + -0.3
5,876,261 + +0.5
5,876,264 + -0.1
5,876,264 + -0.7
5,877,004 + -1.6
5,877,004 + -0.2
5,877,004 + -0.2
5,877,004 + -0.1
5,877,011 + +0.5
5,877,011 + -0.8
5,877,044 + +0.2
5,877,108 + -0.1
5,877,108 + +0.1
5,877,108 + -0.9
5,877,108 + +3.1
5,877,109 - +0.7
5,877,109 - -0.8
5,877,109 - +0.2
5,877,135 + +0.9
5,877,135 + -0.3
5,877,136 - +1.1

Or see this region's nucleotide sequence