Experiment: DL-3-Aminoisobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0596 and PP_0597 are separated by 73 nucleotides PP_0597 and PP_16SD are separated by 750 nucleotides
PP_0596: PP_0596 - Omega-amino acid--pyruvate aminotransferase, at 694,160 to 695,506
_0596
PP_0597: PP_0597 - methylmalonate-semialdehyde dehydrogenase, at 695,580 to 697,073
_0597
PP_16SD: PP_16SD - 16S ribosomal RNA, at 697,824 to 699,345
_16SD
Position (kb) 695
696
697
698 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 694.616 kb on + strand, within PP_0596 at 694.617 kb on - strand, within PP_0596 at 694.639 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.717 kb on - strand, within PP_0596 at 694.717 kb on - strand, within PP_0596 at 694.881 kb on - strand, within PP_0596 at 695.079 kb on - strand, within PP_0596 at 695.111 kb on + strand, within PP_0596 at 695.112 kb on - strand, within PP_0596 at 695.136 kb on - strand, within PP_0596 at 695.136 kb on - strand, within PP_0596 at 695.141 kb on + strand, within PP_0596 at 695.142 kb on - strand, within PP_0596 at 695.142 kb on - strand, within PP_0596 at 695.278 kb on + strand, within PP_0596 at 695.297 kb on + strand, within PP_0596 at 695.297 kb on + strand, within PP_0596 at 695.298 kb on - strand, within PP_0596 at 695.357 kb on + strand, within PP_0596 at 695.358 kb on - strand, within PP_0596 at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.394 kb on - strand at 695.394 kb on - strand at 695.394 kb on - strand at 695.397 kb on + strand at 695.440 kb on + strand at 695.531 kb on + strand at 695.532 kb on - strand at 695.532 kb on - strand at 695.532 kb on - strand at 695.565 kb on + strand at 695.619 kb on - strand at 695.891 kb on + strand, within PP_0597 at 696.054 kb on + strand, within PP_0597 at 696.054 kb on + strand, within PP_0597 at 696.054 kb on + strand, within PP_0597 at 696.126 kb on + strand, within PP_0597 at 696.126 kb on + strand, within PP_0597 at 696.126 kb on + strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.270 kb on + strand, within PP_0597 at 696.270 kb on + strand, within PP_0597 at 696.271 kb on - strand, within PP_0597 at 696.271 kb on - strand, within PP_0597 at 696.276 kb on + strand, within PP_0597 at 696.277 kb on - strand, within PP_0597 at 696.277 kb on - strand, within PP_0597 at 696.277 kb on - strand, within PP_0597 at 696.307 kb on + strand, within PP_0597 at 696.307 kb on + strand, within PP_0597 at 696.308 kb on - strand, within PP_0597 at 696.651 kb on - strand, within PP_0597 at 696.663 kb on + strand, within PP_0597 at 696.663 kb on + strand, within PP_0597 at 696.663 kb on + strand, within PP_0597 at 696.664 kb on - strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.716 kb on + strand, within PP_0597 at 696.717 kb on - strand, within PP_0597 at 696.717 kb on - strand, within PP_0597 at 696.761 kb on + strand, within PP_0597 at 696.761 kb on + strand, within PP_0597 at 696.762 kb on - strand, within PP_0597 at 696.801 kb on + strand, within PP_0597 at 696.802 kb on - strand, within PP_0597 at 696.818 kb on + strand, within PP_0597 at 696.818 kb on + strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.824 kb on + strand, within PP_0597 at 696.825 kb on - strand, within PP_0597 at 696.825 kb on - strand, within PP_0597 at 696.875 kb on + strand, within PP_0597 at 696.875 kb on + strand, within PP_0597 at 696.876 kb on - strand, within PP_0597 at 696.876 kb on - strand, within PP_0597 at 696.893 kb on - strand, within PP_0597 at 696.893 kb on - strand, within PP_0597 at 696.966 kb on + strand at 696.967 kb on - strand at 696.990 kb on + strand at 696.990 kb on + strand at 696.991 kb on - strand at 696.991 kb on - strand at 697.072 kb on - strand at 697.072 kb on - strand at 697.080 kb on + strand at 697.081 kb on - strand at 697.353 kb on + strand at 697.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DL-3-Aminoisobutyric (N) remove 694,616 + PP_0596 0.34 -3.9 694,617 - PP_0596 0.34 -3.2 694,639 + PP_0596 0.36 -2.8 694,716 + PP_0596 0.41 -2.1 694,716 + PP_0596 0.41 -3.7 694,716 + PP_0596 0.41 -2.8 694,716 + PP_0596 0.41 -2.1 694,716 + PP_0596 0.41 -3.7 694,717 - PP_0596 0.41 -3.1 694,717 - PP_0596 0.41 -3.5 694,881 - PP_0596 0.54 -1.1 695,079 - PP_0596 0.68 -6.0 695,111 + PP_0596 0.71 -2.2 695,112 - PP_0596 0.71 -1.5 695,136 - PP_0596 0.72 -2.4 695,136 - PP_0596 0.72 +1.5 695,141 + PP_0596 0.73 -3.7 695,142 - PP_0596 0.73 -3.0 695,142 - PP_0596 0.73 -2.8 695,278 + PP_0596 0.83 -3.2 695,297 + PP_0596 0.84 -3.8 695,297 + PP_0596 0.84 -0.9 695,298 - PP_0596 0.84 -3.6 695,357 + PP_0596 0.89 -4.7 695,358 - PP_0596 0.89 -2.4 695,393 + -4.7 695,393 + -2.5 695,393 + -3.7 695,393 + -2.4 695,393 + -3.2 695,393 + -4.3 695,393 + -1.6 695,394 - -3.7 695,394 - -1.4 695,394 - -1.9 695,397 + -4.8 695,440 + -2.8 695,531 + -1.4 695,532 - -1.5 695,532 - -0.3 695,532 - -3.9 695,565 + +0.9 695,619 - -1.3 695,891 + PP_0597 0.21 -1.7 696,054 + PP_0597 0.32 -2.8 696,054 + PP_0597 0.32 -0.9 696,054 + PP_0597 0.32 -0.9 696,126 + PP_0597 0.37 -0.7 696,126 + PP_0597 0.37 -1.5 696,126 + PP_0597 0.37 -0.8 696,127 - PP_0597 0.37 -3.4 696,127 - PP_0597 0.37 -2.0 696,127 - PP_0597 0.37 -0.2 696,127 - PP_0597 0.37 -2.5 696,270 + PP_0597 0.46 -1.0 696,270 + PP_0597 0.46 -1.2 696,271 - PP_0597 0.46 -1.9 696,271 - PP_0597 0.46 -1.6 696,276 + PP_0597 0.47 -1.1 696,277 - PP_0597 0.47 -1.4 696,277 - PP_0597 0.47 -2.0 696,277 - PP_0597 0.47 +0.8 696,307 + PP_0597 0.49 -1.9 696,307 + PP_0597 0.49 -1.7 696,308 - PP_0597 0.49 -2.0 696,651 - PP_0597 0.72 -1.1 696,663 + PP_0597 0.72 -0.1 696,663 + PP_0597 0.72 -3.4 696,663 + PP_0597 0.72 -1.8 696,664 - PP_0597 0.73 -1.1 696,714 + PP_0597 0.76 -0.6 696,714 + PP_0597 0.76 -1.9 696,714 + PP_0597 0.76 -1.5 696,714 + PP_0597 0.76 -1.1 696,715 - PP_0597 0.76 +0.8 696,715 - PP_0597 0.76 -2.4 696,715 - PP_0597 0.76 +0.5 696,715 - PP_0597 0.76 -0.3 696,715 - PP_0597 0.76 -3.0 696,716 + PP_0597 0.76 -1.0 696,717 - PP_0597 0.76 +0.9 696,717 - PP_0597 0.76 -1.5 696,761 + PP_0597 0.79 -1.5 696,761 + PP_0597 0.79 -1.5 696,762 - PP_0597 0.79 -3.0 696,801 + PP_0597 0.82 -2.6 696,802 - PP_0597 0.82 -1.1 696,818 + PP_0597 0.83 -1.5 696,818 + PP_0597 0.83 +0.3 696,819 - PP_0597 0.83 -2.6 696,819 - PP_0597 0.83 +2.5 696,819 - PP_0597 0.83 -1.5 696,819 - PP_0597 0.83 -0.5 696,824 + PP_0597 0.83 -1.1 696,825 - PP_0597 0.83 -0.6 696,825 - PP_0597 0.83 -1.3 696,875 + PP_0597 0.87 -1.3 696,875 + PP_0597 0.87 -2.5 696,876 - PP_0597 0.87 -1.9 696,876 - PP_0597 0.87 -1.1 696,893 - PP_0597 0.88 -2.2 696,893 - PP_0597 0.88 -2.0 696,966 + -0.7 696,967 - -1.5 696,990 + -3.5 696,990 + -2.2 696,991 - -0.8 696,991 - -1.7 697,072 - -0.0 697,072 - +0.1 697,080 + +1.6 697,081 - -0.6 697,353 + +0.8 697,353 + -0.7
Or see this region's nucleotide sequence