Experiment: Propandiamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4706 and PP_4707 are separated by 75 nucleotides PP_4707 and PP_4708 are separated by 263 nucleotides PP_4708 and PP_5705 are separated by 15 nucleotides PP_5705 and PP_4709 are separated by 19 nucleotides PP_4709 and PP_4710 are separated by 93 nucleotides
PP_4706: PP_4706 - conserved protein of unknown function, at 5,351,019 to 5,351,321
_4706
PP_4707: PP_4707 - OsmY-related protein, at 5,351,397 to 5,351,747
_4707
PP_4708: PP_4708 - Polyribonucleotide nucleotidyltransferase, at 5,352,011 to 5,354,116
_4708
PP_5705: PP_5705 - protein of unknown function, at 5,354,132 to 5,354,347
_5705
PP_4709: PP_4709 - 30S ribosomal subunit protein S15, at 5,354,367 to 5,354,690
_4709
PP_4710: PP_4710 - tRNA pseudouridine 55 synthase, at 5,354,784 to 5,355,701
_4710
Position (kb) 5352
5353
5354
5355 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5351.024 kb on + strand at 5351.025 kb on - strand at 5351.035 kb on + strand at 5351.172 kb on + strand, within PP_4706 at 5351.172 kb on + strand, within PP_4706 at 5351.173 kb on - strand, within PP_4706 at 5351.173 kb on - strand, within PP_4706 at 5351.173 kb on - strand, within PP_4706 at 5351.179 kb on - strand, within PP_4706 at 5351.205 kb on + strand, within PP_4706 at 5351.205 kb on + strand, within PP_4706 at 5351.206 kb on - strand, within PP_4706 at 5351.206 kb on - strand, within PP_4706 at 5351.316 kb on + strand at 5351.317 kb on - strand at 5351.317 kb on - strand at 5351.317 kb on - strand at 5351.317 kb on - strand at 5351.398 kb on + strand at 5351.424 kb on + strand at 5351.425 kb on - strand at 5351.425 kb on - strand at 5351.425 kb on - strand at 5351.454 kb on - strand, within PP_4707 at 5351.454 kb on - strand, within PP_4707 at 5351.591 kb on + strand, within PP_4707 at 5351.721 kb on - strand at 5351.783 kb on + strand at 5351.800 kb on + strand at 5351.800 kb on + strand at 5351.801 kb on - strand at 5351.808 kb on + strand at 5352.012 kb on + strand at 5352.240 kb on + strand at 5352.240 kb on + strand, within PP_4708 at 5352.240 kb on + strand, within PP_4708 at 5352.241 kb on - strand, within PP_4708 at 5352.404 kb on - strand, within PP_4708 at 5352.494 kb on - strand at 5354.209 kb on - strand, within PP_5705 at 5354.282 kb on - strand, within PP_5705 at 5354.282 kb on - strand, within PP_5705 at 5354.726 kb on - strand at 5354.933 kb on - strand, within PP_4710 at 5354.933 kb on - strand, within PP_4710 at 5354.933 kb on - strand, within PP_4710 at 5355.116 kb on - strand, within PP_4710 at 5355.116 kb on - strand, within PP_4710
Per-strain Table
Position Strand Gene LocusTag Fraction Propandiamine (N) remove 5,351,024 + +0.3 5,351,025 - +0.6 5,351,035 + +0.2 5,351,172 + PP_4706 0.50 +0.4 5,351,172 + PP_4706 0.50 +1.5 5,351,173 - PP_4706 0.51 -1.5 5,351,173 - PP_4706 0.51 +1.4 5,351,173 - PP_4706 0.51 +0.2 5,351,179 - PP_4706 0.53 -2.1 5,351,205 + PP_4706 0.61 +0.5 5,351,205 + PP_4706 0.61 -0.4 5,351,206 - PP_4706 0.62 -0.1 5,351,206 - PP_4706 0.62 +0.6 5,351,316 + -0.9 5,351,317 - -1.5 5,351,317 - +0.3 5,351,317 - +0.9 5,351,317 - +0.6 5,351,398 + +1.5 5,351,424 + -1.2 5,351,425 - +0.4 5,351,425 - +0.3 5,351,425 - +0.3 5,351,454 - PP_4707 0.16 +0.1 5,351,454 - PP_4707 0.16 +0.2 5,351,591 + PP_4707 0.55 -0.6 5,351,721 - +0.4 5,351,783 + +0.4 5,351,800 + -0.2 5,351,800 + +0.7 5,351,801 - +1.5 5,351,808 + -0.2 5,352,012 + -0.0 5,352,240 + +0.9 5,352,240 + PP_4708 0.11 +2.5 5,352,240 + PP_4708 0.11 +2.5 5,352,241 - PP_4708 0.11 +0.9 5,352,404 - PP_4708 0.19 +0.9 5,352,494 - -0.5 5,354,209 - PP_5705 0.36 +2.1 5,354,282 - PP_5705 0.69 +0.0 5,354,282 - PP_5705 0.69 +1.1 5,354,726 - +2.5 5,354,933 - PP_4710 0.16 -0.5 5,354,933 - PP_4710 0.16 -2.2 5,354,933 - PP_4710 0.16 -1.0 5,355,116 - PP_4710 0.36 -0.8 5,355,116 - PP_4710 0.36 +0.1
Or see this region's nucleotide sequence