Strain Fitness in Pseudomonas putida KT2440 around PP_1013

Experiment: Propandiamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1011 and PP_1012 are separated by 78 nucleotidesPP_1012 and PP_1013 overlap by 20 nucleotidesPP_1013 and PP_1014 are separated by 215 nucleotides PP_1011: PP_1011 - glucokinase, at 1,153,099 to 1,154,058 _1011 PP_1012: PP_1012 - DNA-binding response regulator, at 1,154,137 to 1,154,862 _1012 PP_1013: PP_1013 - Sensor histidine kinase, at 1,154,843 to 1,156,297 _1013 PP_1014: PP_1014 - aldose-ketose isomerase, at 1,156,513 to 1,157,763 _1014 Position (kb) 1154 1155 1156 1157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1153.873 kb on + strand, within PP_1011at 1153.873 kb on + strand, within PP_1011at 1153.873 kb on + strand, within PP_1011at 1153.874 kb on - strand, within PP_1011at 1153.874 kb on - strand, within PP_1011at 1153.874 kb on - strand, within PP_1011at 1153.874 kb on - strand, within PP_1011at 1153.874 kb on - strand, within PP_1011at 1153.875 kb on + strand, within PP_1011at 1153.876 kb on - strand, within PP_1011at 1153.876 kb on - strand, within PP_1011at 1153.876 kb on - strand, within PP_1011at 1153.956 kb on + strand, within PP_1011at 1153.956 kb on + strand, within PP_1011at 1153.956 kb on + strand, within PP_1011at 1153.966 kb on + strandat 1154.113 kb on + strandat 1154.113 kb on + strandat 1154.113 kb on + strandat 1154.113 kb on + strandat 1154.114 kb on - strandat 1154.207 kb on - strandat 1154.207 kb on - strandat 1154.349 kb on - strand, within PP_1012at 1154.376 kb on - strand, within PP_1012at 1154.376 kb on - strand, within PP_1012at 1154.379 kb on + strand, within PP_1012at 1154.379 kb on + strand, within PP_1012at 1154.379 kb on + strand, within PP_1012at 1154.379 kb on + strand, within PP_1012at 1154.379 kb on + strand, within PP_1012at 1154.380 kb on - strand, within PP_1012at 1154.380 kb on - strand, within PP_1012at 1154.450 kb on - strand, within PP_1012at 1154.827 kb on + strandat 1154.828 kb on - strandat 1154.956 kb on + strandat 1154.956 kb on + strandat 1154.956 kb on + strandat 1154.957 kb on - strandat 1154.957 kb on - strandat 1154.957 kb on - strandat 1154.957 kb on - strandat 1154.957 kb on - strandat 1155.048 kb on - strand, within PP_1013at 1155.330 kb on - strand, within PP_1013at 1155.364 kb on - strand, within PP_1013at 1155.404 kb on + strand, within PP_1013at 1155.404 kb on + strand, within PP_1013at 1155.405 kb on - strand, within PP_1013at 1155.405 kb on - strand, within PP_1013at 1155.431 kb on + strand, within PP_1013at 1155.668 kb on - strand, within PP_1013at 1155.677 kb on + strand, within PP_1013at 1155.890 kb on - strand, within PP_1013at 1155.921 kb on - strand, within PP_1013at 1155.969 kb on - strand, within PP_1013at 1156.032 kb on - strand, within PP_1013at 1156.176 kb on - strandat 1156.214 kb on - strandat 1156.275 kb on - strandat 1156.289 kb on - strandat 1156.345 kb on - strandat 1156.372 kb on - strandat 1156.531 kb on + strandat 1156.531 kb on + strandat 1156.531 kb on + strandat 1156.532 kb on - strandat 1156.756 kb on + strand, within PP_1014at 1156.756 kb on + strand, within PP_1014at 1156.862 kb on - strand, within PP_1014at 1156.862 kb on - strand, within PP_1014at 1156.926 kb on + strand, within PP_1014at 1156.926 kb on + strand, within PP_1014at 1156.926 kb on + strand, within PP_1014at 1156.927 kb on - strand, within PP_1014at 1156.927 kb on - strand, within PP_1014at 1156.927 kb on - strand, within PP_1014at 1156.927 kb on - strand, within PP_1014at 1156.927 kb on - strand, within PP_1014at 1157.148 kb on + strand, within PP_1014at 1157.218 kb on + strand, within PP_1014at 1157.218 kb on + strand, within PP_1014at 1157.219 kb on - strand, within PP_1014at 1157.219 kb on - strand, within PP_1014at 1157.254 kb on + strand, within PP_1014at 1157.255 kb on - strand, within PP_1014at 1157.262 kb on + strand, within PP_1014at 1157.262 kb on + strand, within PP_1014at 1157.263 kb on + strand, within PP_1014at 1157.263 kb on - strand, within PP_1014at 1157.263 kb on - strand, within PP_1014

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Per-strain Table

Position Strand Gene LocusTag Fraction Propandiamine (N)
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1,153,873 + PP_1011 0.81 -2.2
1,153,873 + PP_1011 0.81 -2.6
1,153,873 + PP_1011 0.81 -2.8
1,153,874 - PP_1011 0.81 -3.0
1,153,874 - PP_1011 0.81 -3.1
1,153,874 - PP_1011 0.81 -3.8
1,153,874 - PP_1011 0.81 +2.4
1,153,874 - PP_1011 0.81 -1.1
1,153,875 + PP_1011 0.81 -3.4
1,153,876 - PP_1011 0.81 -1.8
1,153,876 - PP_1011 0.81 -2.2
1,153,876 - PP_1011 0.81 -3.7
1,153,956 + PP_1011 0.89 -1.7
1,153,956 + PP_1011 0.89 +0.0
1,153,956 + PP_1011 0.89 -2.5
1,153,966 + -3.3
1,154,113 + +0.7
1,154,113 + +0.5
1,154,113 + +0.5
1,154,113 + -0.6
1,154,114 - -1.5
1,154,207 - -1.5
1,154,207 - +2.4
1,154,349 - PP_1012 0.29 -2.0
1,154,376 - PP_1012 0.33 -3.2
1,154,376 - PP_1012 0.33 -1.5
1,154,379 + PP_1012 0.33 -2.4
1,154,379 + PP_1012 0.33 -3.4
1,154,379 + PP_1012 0.33 -1.8
1,154,379 + PP_1012 0.33 -1.9
1,154,379 + PP_1012 0.33 -2.2
1,154,380 - PP_1012 0.33 -1.4
1,154,380 - PP_1012 0.33 -0.4
1,154,450 - PP_1012 0.43 -1.6
1,154,827 + -1.3
1,154,828 - -1.9
1,154,956 + -1.8
1,154,956 + -2.3
1,154,956 + -2.0
1,154,957 - -2.2
1,154,957 - -2.0
1,154,957 - -3.1
1,154,957 - -1.3
1,154,957 - -1.4
1,155,048 - PP_1013 0.14 -2.5
1,155,330 - PP_1013 0.33 -0.1
1,155,364 - PP_1013 0.36 -1.5
1,155,404 + PP_1013 0.39 -1.5
1,155,404 + PP_1013 0.39 -0.9
1,155,405 - PP_1013 0.39 -0.5
1,155,405 - PP_1013 0.39 -2.4
1,155,431 + PP_1013 0.40 -2.6
1,155,668 - PP_1013 0.57 -1.8
1,155,677 + PP_1013 0.57 -1.9
1,155,890 - PP_1013 0.72 -2.0
1,155,921 - PP_1013 0.74 +0.9
1,155,969 - PP_1013 0.77 -2.2
1,156,032 - PP_1013 0.82 -1.1
1,156,176 - -1.6
1,156,214 - -2.3
1,156,275 - -0.1
1,156,289 - -1.3
1,156,345 - -3.7
1,156,372 - -1.0
1,156,531 + -1.8
1,156,531 + -1.7
1,156,531 + +2.4
1,156,532 - -2.2
1,156,756 + PP_1014 0.19 -2.7
1,156,756 + PP_1014 0.19 -1.0
1,156,862 - PP_1014 0.28 -3.3
1,156,862 - PP_1014 0.28 -1.6
1,156,926 + PP_1014 0.33 +0.8
1,156,926 + PP_1014 0.33 -0.4
1,156,926 + PP_1014 0.33 -1.0
1,156,927 - PP_1014 0.33 -0.7
1,156,927 - PP_1014 0.33 -1.6
1,156,927 - PP_1014 0.33 +0.1
1,156,927 - PP_1014 0.33 -1.7
1,156,927 - PP_1014 0.33 -1.2
1,157,148 + PP_1014 0.51 -0.7
1,157,218 + PP_1014 0.56 -0.7
1,157,218 + PP_1014 0.56 -0.2
1,157,219 - PP_1014 0.56 +0.4
1,157,219 - PP_1014 0.56 +0.2
1,157,254 + PP_1014 0.59 -0.2
1,157,255 - PP_1014 0.59 -1.7
1,157,262 + PP_1014 0.60 -0.6
1,157,262 + PP_1014 0.60 -0.5
1,157,263 + PP_1014 0.60 +0.8
1,157,263 - PP_1014 0.60 -1.4
1,157,263 - PP_1014 0.60 -1.8

Or see this region's nucleotide sequence