Strain Fitness in Pseudomonas putida KT2440 around PP_4947

Experiment: Propandiamine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Propandiamine (N)
5,629,555	+		PP_4946	0.56	+2.4
5,629,556	-		PP_4946	0.56	-0.8
5,629,556	-		PP_4946	0.56	-1.5
5,629,601	+		PP_4946	0.59	-0.7
5,629,643	+		PP_4946	0.62	-0.3
5,629,703	+		PP_4946	0.65	-1.3
5,629,703	+		PP_4946	0.65	-1.4
5,629,703	+				+0.6
5,629,703	+		PP_4946	0.65	-1.8
5,629,703	+		PP_4946	0.65	-0.6
5,629,703	+		PP_4946	0.65	+0.6
5,629,704	-		PP_4946	0.66	+1.0
5,629,704	-		PP_4946	0.66	-2.7
5,629,743	+		PP_4946	0.68	+0.3
5,629,744	-		PP_4946	0.68	+1.0
5,629,784	+		PP_4946	0.70	-1.8
5,629,784	+		PP_4946	0.70	-0.0
5,629,916	+		PP_4946	0.79	-1.7
5,629,916	+		PP_4946	0.79	+0.5
5,629,916	+		PP_4946	0.79	-0.2
5,629,917	-		PP_4946	0.79	+0.2
5,630,081	+		PP_4946	0.89	-2.1
5,630,081	+		PP_4946	0.89	+2.2
5,630,139	+				+0.7
5,630,188	-				-2.1
5,630,188	-				-0.1
5,630,345	+				-1.2
5,630,346	-				-0.1
5,630,414	+				-1.3
5,630,420	+				-1.1
5,630,420	+				-1.6
5,630,420	+				-0.5
5,630,437	+				+0.0
5,630,456	+				+0.0
5,630,466	-				-0.5
5,630,588	+				-2.0
5,630,588	+				-3.5
5,630,734	-				-1.9
5,631,308	+		PP_4947	0.21	-2.4
5,631,314	+		PP_4947	0.21	-2.7
5,631,362	+		PP_4947	0.23	-2.2
5,631,363	-		PP_4947	0.23	-2.0
5,631,375	-		PP_4947	0.23	-0.6
5,631,375	-		PP_4947	0.23	-1.0
5,631,375	-		PP_4947	0.23	-4.3
5,631,425	+		PP_4947	0.24	-0.5
5,631,425	+		PP_4947	0.24	-2.4
5,631,425	+		PP_4947	0.24	-2.2
5,631,425	+		PP_4947	0.24	-1.5
5,631,425	+		PP_4947	0.24	-0.9
5,631,425	+		PP_4947	0.24	-1.6
5,631,426	-		PP_4947	0.24	-2.4
5,631,426	-		PP_4947	0.24	-2.6
5,631,426	-		PP_4947	0.24	-0.4
5,631,426	-		PP_4947	0.24	-2.2
5,631,426	-		PP_4947	0.24	-2.0
5,631,552	-		PP_4947	0.27	-0.8
5,631,566	-		PP_4947	0.28	-0.9
5,631,680	+		PP_4947	0.31	-2.4
5,631,698	+		PP_4947	0.31	-0.8
5,631,710	+		PP_4947	0.31	-2.2
5,631,711	-		PP_4947	0.31	-3.6
5,631,845	+		PP_4947	0.35	-3.5
5,631,846	-		PP_4947	0.35	-1.2
5,631,846	-		PP_4947	0.35	-2.6
5,631,860	+		PP_4947	0.35	-1.8
5,631,860	+		PP_4947	0.35	-2.6
5,631,906	-		PP_4947	0.36	-2.2
5,631,906	-		PP_4947	0.36	+0.9
5,631,950	+		PP_4947	0.37	-2.0
5,631,951	-		PP_4947	0.37	-1.8
5,631,951	-		PP_4947	0.37	-5.0
5,631,971	+		PP_4947	0.38	+0.2
5,631,971	+		PP_4947	0.38	-2.4
5,631,971	+		PP_4947	0.38	-1.6
5,631,971	+		PP_4947	0.38	-1.8
5,631,971	+		PP_4947	0.38	-2.0
5,631,971	+		PP_4947	0.38	-0.3
5,631,972	-		PP_4947	0.38	-1.4
5,631,987	-		PP_4947	0.38	-2.1
5,632,025	+		PP_4947	0.39	-0.8
5,632,082	+		PP_4947	0.41	-1.4
5,632,082	+		PP_4947	0.41	-4.4
5,632,083	-		PP_4947	0.41	-0.9
5,632,083	-		PP_4947	0.41	-1.5
5,632,083	-		PP_4947	0.41	-1.6
5,632,083	-		PP_4947	0.41	-1.9
5,632,118	+		PP_4947	0.42	-1.4
5,632,298	+		PP_4947	0.46	-0.8
5,632,299	-		PP_4947	0.46	-0.3
5,632,738	+		PP_4947	0.57	-0.1
5,632,739	-		PP_4947	0.57	-2.6
5,633,262	+		PP_4947	0.71	-1.7
5,633,411	+		PP_4947	0.74	-5.2
5,633,412	-		PP_4947	0.74	-2.7
5,633,541	-		PP_4947	0.78	-1.0
5,633,541	-		PP_4947	0.78	-3.0
5,633,672	+		PP_4947	0.81	-2.2
5,633,672	+		PP_4947	0.81	-2.0
5,633,672	+		PP_4947	0.81	+1.3
5,633,672	+		PP_4947	0.81	-3.3
5,633,672	+		PP_4947	0.81	-1.0
5,633,672	+		PP_4947	0.81	-2.0
5,633,673	-		PP_4947	0.81	-2.3
5,633,673	-		PP_4947	0.81	-0.6
5,633,673	-		PP_4947	0.81	-1.6
5,633,768	+		PP_4947	0.83	-0.8
5,633,769	-		PP_4947	0.83	-0.9
5,633,775	-		PP_4947	0.84	+0.7
5,633,874	+		PP_4947	0.86	-4.9
5,633,875	-		PP_4947	0.86	-2.4
5,634,014	+		PP_4947	0.90	-1.5
5,634,014	+		PP_4947	0.90	-2.0
5,634,014	+		PP_4947	0.90	-1.8
5,634,015	-		PP_4947	0.90	-1.2
5,634,015	-		PP_4947	0.90	-0.4
5,634,015	-		PP_4947	0.90	-2.0
5,634,264	+				-1.6
5,634,397	+				-0.5
5,634,504	+				-1.2
5,634,562	+				+0.8
5,634,563	-				+1.2
5,634,570	-				-0.7
5,634,626	+				+0.9
5,634,627	-				+4.1
5,634,628	+				+0.4
5,634,628	+				-2.0
5,634,628	+				+0.1
5,634,628	+				+1.2
5,634,628	+				-0.5
5,634,628	+				-1.0
5,634,628	+				-0.8
5,634,629	-				-2.6
5,634,629	-				+1.3
5,634,629	-				+0.0
5,634,629	-				-1.8
5,634,629	-				+0.0
5,634,629	-				+0.3
5,634,629	-				-0.5
5,634,629	-				+0.6
5,634,651	-				-2.0
5,634,728	+				+0.1
5,634,728	+				+1.1
5,634,729	-				+0.7
5,634,732	-				-1.2
5,634,863	+				-0.9
5,635,007	-		PP_5718	0.29	+1.3
5,635,007	-		PP_5718	0.29	+0.3
5,635,069	+		PP_5718	0.38	+0.7
5,635,070	-		PP_5718	0.38	-0.2
5,635,070	-		PP_5718	0.38	+1.1
5,635,072	+		PP_5718	0.39	+1.0
5,635,105	+		PP_5718	0.44	-2.2
5,635,106	-		PP_5718	0.44	-0.1
5,635,106	-		PP_5718	0.44	+0.7
5,635,113	-		PP_5718	0.45	+0.7
5,635,128	-		PP_5718	0.47	+1.2
5,635,156	+		PP_5718	0.51	+0.7
5,635,157	-		PP_5718	0.51	+0.7
5,635,157	-				+2.5
5,635,197	+		PP_5718	0.57	+0.4
5,635,220	+		PP_5718	0.60	-0.3
5,635,221	-		PP_5718	0.61	-0.6
5,635,221	-		PP_5718	0.61	-0.3
5,635,241	-		PP_5718	0.63	-1.0
5,635,271	+		PP_5718	0.68	-0.2
5,635,272	-		PP_5718	0.68	+1.4
5,635,284	+		PP_5718	0.70	-0.1
5,635,285	-		PP_5718	0.70	-0.3
5,635,308	+		PP_5718	0.73	+0.2
5,635,309	-		PP_5718	0.73	-0.2