Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26540 and PS417_26545 are separated by 38 nucleotides PS417_26545 and PS417_26550 are separated by 3 nucleotides PS417_26550 and PS417_26555 are separated by 25 nucleotides
PS417_26540: PS417_26540 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 5,740,174 to 5,741,580
_26540
PS417_26545: PS417_26545 - 16S rRNA methyltransferase, at 5,741,619 to 5,742,338
_26545
PS417_26550: PS417_26550 - ABC transporter, at 5,742,342 to 5,743,244
_26550
PS417_26555: PS417_26555 - endoribonuclease L-PSP, at 5,743,270 to 5,743,620
_26555
Position (kb) 5741
5742
5743 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 5740.619 kb on - strand, within PS417_26540 at 5740.678 kb on + strand, within PS417_26540 at 5740.678 kb on + strand, within PS417_26540 at 5740.679 kb on - strand, within PS417_26540 at 5740.710 kb on - strand, within PS417_26540 at 5740.770 kb on + strand, within PS417_26540 at 5740.771 kb on - strand, within PS417_26540 at 5740.871 kb on - strand, within PS417_26540 at 5740.871 kb on - strand, within PS417_26540 at 5740.882 kb on + strand, within PS417_26540 at 5740.882 kb on + strand, within PS417_26540 at 5740.882 kb on + strand, within PS417_26540 at 5740.882 kb on + strand, within PS417_26540 at 5740.949 kb on + strand, within PS417_26540 at 5741.080 kb on + strand, within PS417_26540 at 5741.080 kb on + strand, within PS417_26540 at 5741.093 kb on - strand, within PS417_26540 at 5741.138 kb on - strand, within PS417_26540 at 5741.434 kb on + strand, within PS417_26540 at 5741.434 kb on + strand, within PS417_26540 at 5741.435 kb on - strand, within PS417_26540 at 5741.449 kb on + strand at 5741.597 kb on + strand at 5741.598 kb on - strand at 5741.694 kb on + strand, within PS417_26545 at 5741.694 kb on + strand at 5741.694 kb on + strand, within PS417_26545 at 5742.271 kb on + strand at 5742.337 kb on - strand at 5742.643 kb on + strand, within PS417_26550 at 5742.861 kb on - strand, within PS417_26550 at 5742.982 kb on + strand, within PS417_26550 at 5742.993 kb on - strand at 5743.058 kb on - strand, within PS417_26550 at 5743.091 kb on - strand, within PS417_26550 at 5743.127 kb on + strand, within PS417_26550 at 5743.248 kb on + strand at 5743.275 kb on + strand at 5743.275 kb on + strand at 5743.276 kb on - strand at 5743.276 kb on - strand at 5743.306 kb on + strand, within PS417_26555 at 5743.307 kb on - strand, within PS417_26555 at 5743.307 kb on - strand, within PS417_26555 at 5743.307 kb on - strand, within PS417_26555
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 5,740,619 - PS417_26540 0.32 -1.0 5,740,678 + PS417_26540 0.36 +1.1 5,740,678 + PS417_26540 0.36 -1.8 5,740,679 - PS417_26540 0.36 +0.8 5,740,710 - PS417_26540 0.38 +0.5 5,740,770 + PS417_26540 0.42 +0.3 5,740,771 - PS417_26540 0.42 +0.5 5,740,871 - PS417_26540 0.50 +1.8 5,740,871 - PS417_26540 0.50 -0.2 5,740,882 + PS417_26540 0.50 -0.6 5,740,882 + PS417_26540 0.50 -2.0 5,740,882 + PS417_26540 0.50 -1.4 5,740,882 + PS417_26540 0.50 -0.6 5,740,949 + PS417_26540 0.55 +1.8 5,741,080 + PS417_26540 0.64 +0.2 5,741,080 + PS417_26540 0.64 -0.4 5,741,093 - PS417_26540 0.65 +0.9 5,741,138 - PS417_26540 0.69 -1.0 5,741,434 + PS417_26540 0.90 -0.5 5,741,434 + PS417_26540 0.90 +0.9 5,741,435 - PS417_26540 0.90 +0.4 5,741,449 + -0.4 5,741,597 + +0.6 5,741,598 - +0.5 5,741,694 + PS417_26545 0.10 +0.2 5,741,694 + +0.6 5,741,694 + PS417_26545 0.10 +6.6 5,742,271 + -0.2 5,742,337 - -1.6 5,742,643 + PS417_26550 0.33 -0.5 5,742,861 - PS417_26550 0.57 +0.4 5,742,982 + PS417_26550 0.71 +0.6 5,742,993 - -1.2 5,743,058 - PS417_26550 0.79 +1.0 5,743,091 - PS417_26550 0.83 -1.5 5,743,127 + PS417_26550 0.87 +0.4 5,743,248 + +1.7 5,743,275 + -0.4 5,743,275 + -0.3 5,743,276 - +0.1 5,743,276 - +1.0 5,743,306 + PS417_26555 0.10 -0.6 5,743,307 - PS417_26555 0.11 +0.0 5,743,307 - PS417_26555 0.11 -0.6 5,743,307 - PS417_26555 0.11 -0.0
Or see this region's nucleotide sequence