Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26370 and PS417_26375 are separated by 69 nucleotides PS417_26375 and PS417_26380 are separated by 227 nucleotides
PS417_26370: PS417_26370 - RNA helicase, at 5,702,436 to 5,703,821
_26370
PS417_26375: PS417_26375 - membrane protein, at 5,703,891 to 5,705,069
_26375
PS417_26380: PS417_26380 - YccS/YhfK family integral membrane protein, at 5,705,297 to 5,707,480
_26380
Position (kb) 5703
5704
5705
5706 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5702.934 kb on + strand, within PS417_26370 at 5703.148 kb on + strand, within PS417_26370 at 5703.149 kb on - strand, within PS417_26370 at 5703.820 kb on - strand at 5703.820 kb on - strand at 5703.834 kb on + strand at 5703.876 kb on + strand at 5703.877 kb on - strand at 5704.052 kb on + strand, within PS417_26375 at 5704.052 kb on + strand, within PS417_26375 at 5704.052 kb on + strand, within PS417_26375 at 5704.052 kb on + strand at 5704.052 kb on + strand, within PS417_26375 at 5704.053 kb on - strand, within PS417_26375 at 5704.053 kb on - strand, within PS417_26375 at 5704.053 kb on - strand, within PS417_26375 at 5704.056 kb on + strand, within PS417_26375 at 5704.057 kb on - strand, within PS417_26375 at 5704.167 kb on + strand, within PS417_26375 at 5704.615 kb on + strand, within PS417_26375 at 5704.616 kb on - strand, within PS417_26375 at 5704.809 kb on + strand, within PS417_26375 at 5704.810 kb on - strand, within PS417_26375 at 5704.832 kb on + strand, within PS417_26375 at 5704.972 kb on - strand at 5705.061 kb on + strand at 5705.081 kb on - strand at 5705.357 kb on + strand at 5706.041 kb on + strand, within PS417_26380 at 5706.041 kb on + strand, within PS417_26380 at 5706.041 kb on + strand, within PS417_26380 at 5706.041 kb on + strand, within PS417_26380 at 5706.042 kb on - strand, within PS417_26380 at 5706.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 5,702,934 + PS417_26370 0.36 -1.5 5,703,148 + PS417_26370 0.51 -2.5 5,703,149 - PS417_26370 0.51 -0.9 5,703,820 - +0.2 5,703,820 - -0.1 5,703,834 + +0.3 5,703,876 + -1.3 5,703,877 - -0.4 5,704,052 + PS417_26375 0.14 +0.6 5,704,052 + PS417_26375 0.14 -0.4 5,704,052 + PS417_26375 0.14 +2.3 5,704,052 + +0.6 5,704,052 + PS417_26375 0.14 +0.0 5,704,053 - PS417_26375 0.14 +0.8 5,704,053 - PS417_26375 0.14 -0.6 5,704,053 - PS417_26375 0.14 -0.1 5,704,056 + PS417_26375 0.14 -1.2 5,704,057 - PS417_26375 0.14 +0.1 5,704,167 + PS417_26375 0.23 +0.1 5,704,615 + PS417_26375 0.61 +1.0 5,704,616 - PS417_26375 0.61 +0.7 5,704,809 + PS417_26375 0.78 +0.8 5,704,810 - PS417_26375 0.78 -0.4 5,704,832 + PS417_26375 0.80 +0.6 5,704,972 - +1.1 5,705,061 + -0.1 5,705,081 - -0.4 5,705,357 + +0.2 5,706,041 + PS417_26380 0.34 +1.0 5,706,041 + PS417_26380 0.34 +1.4 5,706,041 + PS417_26380 0.34 +0.8 5,706,041 + PS417_26380 0.34 -1.8 5,706,042 - PS417_26380 0.34 +0.8 5,706,042 - +3.4
Or see this region's nucleotide sequence