Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24530 and PS417_24535 are separated by 176 nucleotides PS417_24535 and PS417_24540 are separated by 40 nucleotides PS417_24540 and PS417_24545 are separated by 18 nucleotides
PS417_24530: PS417_24530 - ABC transporter substrate-binding protein, at 5,322,183 to 5,322,914
_24530
PS417_24535: PS417_24535 - membrane protein, at 5,323,091 to 5,323,750
_24535
PS417_24540: PS417_24540 - endonuclease, at 5,323,791 to 5,324,879
_24540
PS417_24545: PS417_24545 - isomerase, at 5,324,898 to 5,325,650
_24545
Position (kb) 5323
5324
5325 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 5322.974 kb on + strand at 5322.974 kb on + strand at 5322.975 kb on - strand at 5322.975 kb on - strand at 5323.022 kb on + strand at 5323.023 kb on - strand at 5323.023 kb on - strand at 5323.032 kb on + strand at 5323.033 kb on - strand at 5323.073 kb on - strand at 5323.278 kb on - strand, within PS417_24535 at 5323.337 kb on - strand, within PS417_24535 at 5323.478 kb on + strand, within PS417_24535 at 5323.751 kb on + strand at 5323.780 kb on - strand at 5323.802 kb on - strand at 5323.861 kb on - strand at 5323.977 kb on + strand, within PS417_24540 at 5323.977 kb on + strand, within PS417_24540 at 5323.978 kb on - strand, within PS417_24540 at 5324.008 kb on - strand, within PS417_24540 at 5324.397 kb on + strand, within PS417_24540 at 5324.513 kb on + strand, within PS417_24540 at 5324.613 kb on + strand, within PS417_24540 at 5324.769 kb on + strand, within PS417_24540 at 5324.770 kb on - strand, within PS417_24540 at 5324.816 kb on + strand at 5324.817 kb on - strand at 5324.817 kb on - strand at 5324.821 kb on + strand at 5324.822 kb on - strand at 5324.822 kb on - strand at 5324.825 kb on + strand at 5324.877 kb on + strand at 5324.877 kb on + strand at 5324.878 kb on - strand at 5324.900 kb on - strand at 5325.069 kb on + strand, within PS417_24545 at 5325.069 kb on + strand, within PS417_24545 at 5325.069 kb on + strand, within PS417_24545 at 5325.069 kb on + strand, within PS417_24545 at 5325.070 kb on - strand, within PS417_24545 at 5325.070 kb on - strand, within PS417_24545 at 5325.070 kb on - strand, within PS417_24545 at 5325.088 kb on + strand, within PS417_24545 at 5325.139 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.215 kb on - strand, within PS417_24545 at 5325.248 kb on + strand, within PS417_24545 at 5325.278 kb on - strand, within PS417_24545 at 5325.299 kb on + strand, within PS417_24545 at 5325.299 kb on + strand, within PS417_24545 at 5325.303 kb on + strand, within PS417_24545 at 5325.303 kb on + strand, within PS417_24545 at 5325.303 kb on + strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.496 kb on + strand, within PS417_24545 at 5325.497 kb on - strand, within PS417_24545 at 5325.497 kb on - strand, within PS417_24545 at 5325.497 kb on - strand, within PS417_24545 at 5325.655 kb on - strand at 5325.658 kb on + strand at 5325.659 kb on - strand at 5325.673 kb on + strand at 5325.722 kb on - strand at 5325.744 kb on - strand at 5325.744 kb on - strand at 5325.744 kb on - strand at 5325.764 kb on - strand at 5325.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 5,322,974 + -2.1 5,322,974 + -0.1 5,322,975 - -0.9 5,322,975 - -2.1 5,323,022 + -0.1 5,323,023 - -0.5 5,323,023 - +1.2 5,323,032 + -0.2 5,323,033 - +0.4 5,323,073 - -0.2 5,323,278 - PS417_24535 0.28 -0.1 5,323,337 - PS417_24535 0.37 +1.3 5,323,478 + PS417_24535 0.59 +0.3 5,323,751 + -0.3 5,323,780 - -0.5 5,323,802 - +0.7 5,323,861 - +0.8 5,323,977 + PS417_24540 0.17 +0.1 5,323,977 + PS417_24540 0.17 +0.7 5,323,978 - PS417_24540 0.17 -1.2 5,324,008 - PS417_24540 0.20 +0.1 5,324,397 + PS417_24540 0.56 -1.3 5,324,513 + PS417_24540 0.66 +0.1 5,324,613 + PS417_24540 0.75 -0.4 5,324,769 + PS417_24540 0.90 +8.7 5,324,770 - PS417_24540 0.90 -2.2 5,324,816 + -0.2 5,324,817 - +1.5 5,324,817 - -0.9 5,324,821 + +0.1 5,324,822 - -0.8 5,324,822 - +0.6 5,324,825 + +0.6 5,324,877 + +0.8 5,324,877 + +0.1 5,324,878 - -1.7 5,324,900 - +0.5 5,325,069 + PS417_24545 0.23 -0.4 5,325,069 + PS417_24545 0.23 +0.0 5,325,069 + PS417_24545 0.23 -2.5 5,325,069 + PS417_24545 0.23 +0.1 5,325,070 - PS417_24545 0.23 +1.7 5,325,070 - PS417_24545 0.23 -0.4 5,325,070 - PS417_24545 0.23 -0.6 5,325,088 + PS417_24545 0.25 +2.4 5,325,139 + PS417_24545 0.32 +0.5 5,325,211 + PS417_24545 0.42 -0.4 5,325,211 + PS417_24545 0.42 +0.5 5,325,211 + PS417_24545 0.42 -1.4 5,325,211 + PS417_24545 0.42 +0.1 5,325,211 + PS417_24545 0.42 -0.8 5,325,211 + PS417_24545 0.42 +1.0 5,325,211 + PS417_24545 0.42 -0.1 5,325,212 - PS417_24545 0.42 +0.5 5,325,212 - PS417_24545 0.42 -0.4 5,325,212 - PS417_24545 0.42 -1.0 5,325,212 - PS417_24545 0.42 +0.1 5,325,212 - PS417_24545 0.42 -0.1 5,325,212 - PS417_24545 0.42 +0.3 5,325,212 - PS417_24545 0.42 -1.2 5,325,212 - PS417_24545 0.42 -1.6 5,325,215 - PS417_24545 0.42 -0.4 5,325,248 + PS417_24545 0.46 +0.2 5,325,278 - PS417_24545 0.50 -0.7 5,325,299 + PS417_24545 0.53 -1.5 5,325,299 + PS417_24545 0.53 +1.8 5,325,303 + PS417_24545 0.54 +0.3 5,325,303 + PS417_24545 0.54 -0.6 5,325,303 + PS417_24545 0.54 -0.0 5,325,304 - PS417_24545 0.54 -1.2 5,325,304 - PS417_24545 0.54 +0.3 5,325,304 - PS417_24545 0.54 +0.1 5,325,304 - PS417_24545 0.54 -1.3 5,325,304 - PS417_24545 0.54 +0.6 5,325,304 - PS417_24545 0.54 +0.3 5,325,304 - PS417_24545 0.54 -0.2 5,325,304 - PS417_24545 0.54 +0.7 5,325,496 + PS417_24545 0.79 -0.1 5,325,497 - PS417_24545 0.80 +0.0 5,325,497 - PS417_24545 0.80 -0.7 5,325,497 - PS417_24545 0.80 +0.2 5,325,655 - +0.1 5,325,658 + -0.6 5,325,659 - +0.4 5,325,673 + -0.5 5,325,722 - +1.1 5,325,744 - +0.3 5,325,744 - -0.3 5,325,744 - +0.4 5,325,764 - +0.4 5,325,764 - +0.9
Or see this region's nucleotide sequence