Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02355 and PS417_02360 are separated by 166 nucleotides PS417_02360 and PS417_02365 overlap by 32 nucleotides PS417_02365 and PS417_02370 are separated by 193 nucleotides
PS417_02355: PS417_02355 - thiamine biosynthesis protein ThiC, at 538,378 to 540,270
_02355
PS417_02360: PS417_02360 - nitrate reductase, at 540,437 to 541,726
_02360
PS417_02365: PS417_02365 - hypothetical protein, at 541,695 to 542,441
_02365
PS417_02370: PS417_02370 - ADP-ribose pyrophosphatase, at 542,635 to 543,252
_02370
Position (kb) 540
541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.479 kb on + strand, within PS417_02355 at 539.518 kb on + strand, within PS417_02355 at 539.519 kb on - strand, within PS417_02355 at 539.519 kb on - strand, within PS417_02355 at 539.741 kb on - strand, within PS417_02355 at 539.912 kb on - strand, within PS417_02355 at 540.055 kb on + strand, within PS417_02355 at 540.339 kb on - strand at 540.458 kb on + strand at 540.459 kb on - strand at 540.871 kb on - strand, within PS417_02360 at 540.871 kb on - strand, within PS417_02360 at 541.211 kb on + strand, within PS417_02360 at 541.780 kb on + strand, within PS417_02365 at 541.781 kb on - strand, within PS417_02365 at 542.008 kb on + strand, within PS417_02365 at 542.060 kb on - strand, within PS417_02365 at 542.103 kb on + strand, within PS417_02365 at 542.363 kb on - strand, within PS417_02365 at 542.363 kb on - strand, within PS417_02365 at 542.463 kb on - strand at 542.516 kb on - strand at 542.635 kb on - strand at 542.707 kb on + strand, within PS417_02370 at 542.708 kb on - strand, within PS417_02370
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 539,479 + PS417_02355 0.58 +0.6 539,518 + PS417_02355 0.60 -0.5 539,519 - PS417_02355 0.60 +0.9 539,519 - PS417_02355 0.60 -1.4 539,741 - PS417_02355 0.72 +0.1 539,912 - PS417_02355 0.81 -0.2 540,055 + PS417_02355 0.89 -2.2 540,339 - +0.5 540,458 + -2.6 540,459 - -1.2 540,871 - PS417_02360 0.34 -1.6 540,871 - PS417_02360 0.34 -2.1 541,211 + PS417_02360 0.60 -0.3 541,780 + PS417_02365 0.11 +0.8 541,781 - PS417_02365 0.12 -0.0 542,008 + PS417_02365 0.42 -0.1 542,060 - PS417_02365 0.49 +0.3 542,103 + PS417_02365 0.55 +2.2 542,363 - PS417_02365 0.89 +0.6 542,363 - PS417_02365 0.89 -0.9 542,463 - +1.5 542,516 - -3.1 542,635 - +0.4 542,707 + PS417_02370 0.12 -1.3 542,708 - PS417_02370 0.12 +0.8
Or see this region's nucleotide sequence