Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02080 and PS417_02085 overlap by 17 nucleotides PS417_02085 and PS417_02090 overlap by 4 nucleotides PS417_02090 and PS417_02095 overlap by 8 nucleotides
PS417_02080: PS417_02080 - histidine ammonia-lyase, at 465,875 to 467,416
_02080
PS417_02085: PS417_02085 - glycosyl transferase, at 467,400 to 468,335
_02085
PS417_02090: PS417_02090 - glycosyl transferase, at 468,332 to 469,066
_02090
PS417_02095: PS417_02095 - AMP-binding protein, at 469,059 to 470,729
_02095
Position (kb) 468
469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 467.512 kb on - strand at 468.556 kb on - strand, within PS417_02090 at 468.678 kb on + strand, within PS417_02090 at 468.679 kb on - strand at 469.130 kb on - strand at 469.130 kb on - strand at 469.209 kb on + strand at 469.262 kb on + strand, within PS417_02095 at 469.328 kb on - strand, within PS417_02095 at 469.825 kb on + strand, within PS417_02095 at 469.826 kb on - strand, within PS417_02095
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 467,512 - -0.3 468,556 - PS417_02090 0.30 +1.0 468,678 + PS417_02090 0.47 +0.9 468,679 - +3.2 469,130 - -0.0 469,130 - +0.4 469,209 + -0.4 469,262 + PS417_02095 0.12 +0.9 469,328 - PS417_02095 0.16 -0.0 469,825 + PS417_02095 0.46 -2.9 469,826 - PS417_02095 0.46 -1.8
Or see this region's nucleotide sequence