Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19060 and PS417_19065 overlap by 4 nucleotides PS417_19065 and PS417_19070 overlap by 12 nucleotides PS417_19070 and PS417_19075 are separated by 4 nucleotides
PS417_19060: PS417_19060 - NADPH:quinone oxidoreductase, at 4,124,278 to 4,125,258
_19060
PS417_19065: PS417_19065 - monooxygenase, at 4,125,255 to 4,125,593
_19065
PS417_19070: PS417_19070 - hypothetical protein, at 4,125,582 to 4,126,310
_19070
PS417_19075: PS417_19075 - ABC transporter ATP-binding protein, at 4,126,315 to 4,127,646
_19075
Position (kb) 4125
4126 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4124.291 kb on + strand at 4124.292 kb on - strand at 4124.292 kb on - strand at 4124.295 kb on + strand at 4124.295 kb on + strand at 4124.295 kb on + strand at 4124.296 kb on - strand at 4124.296 kb on - strand at 4124.407 kb on + strand, within PS417_19060 at 4124.537 kb on - strand, within PS417_19060 at 4124.578 kb on + strand, within PS417_19060 at 4124.579 kb on - strand, within PS417_19060 at 4124.723 kb on + strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.873 kb on - strand, within PS417_19060 at 4124.873 kb on - strand, within PS417_19060 at 4125.098 kb on + strand, within PS417_19060 at 4125.099 kb on - strand, within PS417_19060 at 4125.148 kb on + strand, within PS417_19060 at 4125.522 kb on + strand, within PS417_19065 at 4125.660 kb on + strand, within PS417_19070 at 4125.674 kb on - strand, within PS417_19070 at 4125.688 kb on - strand, within PS417_19070 at 4125.945 kb on + strand, within PS417_19070 at 4125.945 kb on + strand, within PS417_19070 at 4125.946 kb on - strand, within PS417_19070 at 4125.947 kb on + strand at 4125.947 kb on + strand, within PS417_19070 at 4125.948 kb on - strand, within PS417_19070 at 4125.948 kb on - strand, within PS417_19070 at 4126.056 kb on + strand, within PS417_19070 at 4126.057 kb on - strand, within PS417_19070 at 4126.076 kb on - strand, within PS417_19070 at 4126.085 kb on + strand, within PS417_19070 at 4126.086 kb on - strand, within PS417_19070 at 4126.258 kb on + strand at 4126.259 kb on - strand at 4126.377 kb on + strand at 4126.378 kb on - strand at 4126.499 kb on - strand at 4126.509 kb on - strand, within PS417_19075 at 4126.509 kb on - strand, within PS417_19075
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 4,124,291 + +0.2 4,124,292 - +0.1 4,124,292 - +1.2 4,124,295 + -0.3 4,124,295 + +0.4 4,124,295 + -0.1 4,124,296 - +0.0 4,124,296 - +1.1 4,124,407 + PS417_19060 0.13 -1.9 4,124,537 - PS417_19060 0.26 -3.6 4,124,578 + PS417_19060 0.31 -0.9 4,124,579 - PS417_19060 0.31 -3.5 4,124,723 + PS417_19060 0.45 +0.1 4,124,724 - PS417_19060 0.45 -0.5 4,124,724 - PS417_19060 0.45 -0.9 4,124,724 - PS417_19060 0.45 +0.4 4,124,872 + PS417_19060 0.61 -1.0 4,124,872 + PS417_19060 0.61 +0.4 4,124,872 + PS417_19060 0.61 +0.2 4,124,873 - PS417_19060 0.61 -1.4 4,124,873 - PS417_19060 0.61 +1.1 4,125,098 + PS417_19060 0.84 -1.2 4,125,099 - PS417_19060 0.84 +0.3 4,125,148 + PS417_19060 0.89 -0.3 4,125,522 + PS417_19065 0.79 -1.3 4,125,660 + PS417_19070 0.11 -0.8 4,125,674 - PS417_19070 0.13 -1.0 4,125,688 - PS417_19070 0.15 +0.4 4,125,945 + PS417_19070 0.50 -1.1 4,125,945 + PS417_19070 0.50 +1.2 4,125,946 - PS417_19070 0.50 -2.5 4,125,947 + -1.6 4,125,947 + PS417_19070 0.50 +0.2 4,125,948 - PS417_19070 0.50 -0.7 4,125,948 - PS417_19070 0.50 -2.3 4,126,056 + PS417_19070 0.65 +0.8 4,126,057 - PS417_19070 0.65 -0.3 4,126,076 - PS417_19070 0.68 -0.3 4,126,085 + PS417_19070 0.69 +0.2 4,126,086 - PS417_19070 0.69 -0.4 4,126,258 + +1.3 4,126,259 - -0.2 4,126,377 + -0.9 4,126,378 - +1.1 4,126,499 - +0.4 4,126,509 - PS417_19075 0.15 -0.9 4,126,509 - PS417_19075 0.15 -2.1
Or see this region's nucleotide sequence