Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01155 and PS417_01160 are separated by 214 nucleotides PS417_01160 and PS417_01165 overlap by 1 nucleotides PS417_01165 and PS417_01170 are separated by 357 nucleotides
PS417_01155: PS417_01155 - glutamate--cysteine ligase, at 253,531 to 255,114
_01155
PS417_01160: PS417_01160 - hypothetical protein, at 255,329 to 255,712
_01160
PS417_01165: PS417_01165 - transcription accessory protein, at 255,712 to 258,036
_01165
PS417_01170: PS417_01170 - chemotaxis protein CheY, at 258,394 to 259,134
_01170
Position (kb) 255
256
257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 255.168 kb on + strand at 255.206 kb on + strand at 255.330 kb on + strand at 255.332 kb on + strand at 255.332 kb on + strand at 255.470 kb on - strand, within PS417_01160 at 255.471 kb on + strand, within PS417_01160 at 255.471 kb on + strand, within PS417_01160 at 255.472 kb on - strand, within PS417_01160 at 255.544 kb on + strand, within PS417_01160 at 255.544 kb on + strand, within PS417_01160 at 255.544 kb on + strand, within PS417_01160 at 255.545 kb on - strand, within PS417_01160 at 255.545 kb on - strand, within PS417_01160 at 256.207 kb on + strand, within PS417_01165 at 256.656 kb on + strand, within PS417_01165 at 256.829 kb on + strand, within PS417_01165 at 256.967 kb on - strand, within PS417_01165 at 256.976 kb on + strand, within PS417_01165 at 257.186 kb on + strand, within PS417_01165 at 257.187 kb on - strand, within PS417_01165 at 257.344 kb on - strand, within PS417_01165 at 257.344 kb on - strand, within PS417_01165 at 257.344 kb on - strand, within PS417_01165 at 257.344 kb on - strand, within PS417_01165 at 257.495 kb on + strand, within PS417_01165 at 257.495 kb on + strand, within PS417_01165 at 257.500 kb on - strand, within PS417_01165 at 257.552 kb on + strand, within PS417_01165 at 257.552 kb on + strand, within PS417_01165 at 257.552 kb on + strand, within PS417_01165 at 257.553 kb on - strand, within PS417_01165 at 257.553 kb on - strand, within PS417_01165 at 257.724 kb on - strand, within PS417_01165 at 257.724 kb on - strand, within PS417_01165 at 257.919 kb on + strand at 257.920 kb on - strand at 258.144 kb on + strand at 258.145 kb on - strand at 258.244 kb on + strand at 258.247 kb on - strand at 258.345 kb on + strand at 258.345 kb on + strand at 258.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 255,168 + -0.8 255,206 + -0.2 255,330 + -1.4 255,332 + +1.6 255,332 + -0.4 255,470 - PS417_01160 0.37 -2.4 255,471 + PS417_01160 0.37 +0.5 255,471 + PS417_01160 0.37 +2.3 255,472 - PS417_01160 0.37 -0.8 255,544 + PS417_01160 0.56 +0.1 255,544 + PS417_01160 0.56 +0.5 255,544 + PS417_01160 0.56 +1.0 255,545 - PS417_01160 0.56 -1.3 255,545 - PS417_01160 0.56 +1.1 256,207 + PS417_01165 0.21 +1.4 256,656 + PS417_01165 0.41 +0.3 256,829 + PS417_01165 0.48 +0.2 256,967 - PS417_01165 0.54 +1.6 256,976 + PS417_01165 0.54 -1.2 257,186 + PS417_01165 0.63 +0.9 257,187 - PS417_01165 0.63 +0.8 257,344 - PS417_01165 0.70 +0.7 257,344 - PS417_01165 0.70 +2.1 257,344 - PS417_01165 0.70 +0.6 257,344 - PS417_01165 0.70 +0.2 257,495 + PS417_01165 0.77 -1.1 257,495 + PS417_01165 0.77 +0.0 257,500 - PS417_01165 0.77 +0.7 257,552 + PS417_01165 0.79 +1.6 257,552 + PS417_01165 0.79 -0.1 257,552 + PS417_01165 0.79 +0.2 257,553 - PS417_01165 0.79 +0.6 257,553 - PS417_01165 0.79 +0.7 257,724 - PS417_01165 0.87 +2.0 257,724 - PS417_01165 0.87 -1.2 257,919 + -2.6 257,920 - +1.4 258,144 + +0.6 258,145 - +0.3 258,244 + -0.5 258,247 - +2.0 258,345 + -0.8 258,345 + -2.1 258,379 + +1.4
Or see this region's nucleotide sequence