Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08965 and PS417_08970 are separated by 95 nucleotides PS417_08970 and PS417_08975 are separated by 178 nucleotides
PS417_08965: PS417_08965 - 5-oxo-L-prolinase, at 1,951,019 to 1,952,041
_08965
PS417_08970: PS417_08970 - chemotaxis protein, at 1,952,137 to 1,953,762
_08970
PS417_08975: PS417_08975 - 3-oxoacyl-ACP synthase, at 1,953,941 to 1,955,161
_08975
Position (kb) 1952
1953
1954 Strain fitness (log2 ratio) -1
0
1 at 1951.254 kb on - strand, within PS417_08965 at 1951.280 kb on + strand, within PS417_08965 at 1951.280 kb on + strand, within PS417_08965 at 1951.281 kb on - strand, within PS417_08965 at 1951.286 kb on + strand, within PS417_08965 at 1951.538 kb on + strand, within PS417_08965 at 1951.539 kb on - strand, within PS417_08965 at 1951.539 kb on - strand, within PS417_08965 at 1951.539 kb on - strand, within PS417_08965 at 1951.616 kb on + strand, within PS417_08965 at 1951.617 kb on - strand, within PS417_08965 at 1951.772 kb on + strand, within PS417_08965 at 1951.773 kb on - strand, within PS417_08965 at 1951.877 kb on - strand, within PS417_08965 at 1952.058 kb on + strand at 1952.142 kb on + strand at 1952.143 kb on - strand at 1952.307 kb on + strand, within PS417_08970 at 1952.307 kb on + strand, within PS417_08970 at 1952.440 kb on + strand, within PS417_08970 at 1952.440 kb on + strand, within PS417_08970 at 1952.456 kb on + strand at 1952.457 kb on - strand, within PS417_08970 at 1952.477 kb on + strand, within PS417_08970 at 1952.478 kb on - strand, within PS417_08970 at 1952.509 kb on + strand, within PS417_08970 at 1952.509 kb on + strand, within PS417_08970 at 1952.688 kb on - strand, within PS417_08970 at 1952.775 kb on + strand, within PS417_08970 at 1953.241 kb on + strand, within PS417_08970 at 1953.359 kb on + strand, within PS417_08970 at 1953.483 kb on + strand, within PS417_08970 at 1953.483 kb on + strand, within PS417_08970 at 1953.761 kb on - strand at 1953.821 kb on + strand at 1953.822 kb on - strand at 1953.873 kb on + strand at 1953.873 kb on + strand at 1953.942 kb on + strand at 1953.943 kb on - strand at 1953.943 kb on - strand at 1953.943 kb on - strand at 1953.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,951,254 - PS417_08965 0.23 +0.7 1,951,280 + PS417_08965 0.26 -0.6 1,951,280 + PS417_08965 0.26 +0.2 1,951,281 - PS417_08965 0.26 +0.1 1,951,286 + PS417_08965 0.26 +0.3 1,951,538 + PS417_08965 0.51 +0.4 1,951,539 - PS417_08965 0.51 +1.4 1,951,539 - PS417_08965 0.51 +0.2 1,951,539 - PS417_08965 0.51 +0.4 1,951,616 + PS417_08965 0.58 +0.4 1,951,617 - PS417_08965 0.58 +0.3 1,951,772 + PS417_08965 0.74 +0.1 1,951,773 - PS417_08965 0.74 +0.2 1,951,877 - PS417_08965 0.84 +0.0 1,952,058 + +0.2 1,952,142 + -0.2 1,952,143 - -0.7 1,952,307 + PS417_08970 0.10 +0.6 1,952,307 + PS417_08970 0.10 -0.9 1,952,440 + PS417_08970 0.19 +1.4 1,952,440 + PS417_08970 0.19 -1.0 1,952,456 + +0.9 1,952,457 - PS417_08970 0.20 -0.4 1,952,477 + PS417_08970 0.21 -0.9 1,952,478 - PS417_08970 0.21 -1.3 1,952,509 + PS417_08970 0.23 +1.1 1,952,509 + PS417_08970 0.23 +0.3 1,952,688 - PS417_08970 0.34 +0.6 1,952,775 + PS417_08970 0.39 +0.1 1,953,241 + PS417_08970 0.68 -1.5 1,953,359 + PS417_08970 0.75 +0.7 1,953,483 + PS417_08970 0.83 +0.0 1,953,483 + PS417_08970 0.83 +0.8 1,953,761 - -0.3 1,953,821 + -0.2 1,953,822 - +0.2 1,953,873 + +0.1 1,953,873 + +1.0 1,953,942 + -0.1 1,953,943 - -0.2 1,953,943 - +0.8 1,953,943 - -0.0 1,953,946 + -0.7
Or see this region's nucleotide sequence