Strain Fitness in Pseudomonas simiae WCS417 around PS417_06730

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06725 and PS417_06730 are separated by 10 nucleotidesPS417_06730 and PS417_06735 are separated by 10 nucleotidesPS417_06735 and PS417_06740 are separated by 10 nucleotides PS417_06725: PS417_06725 - alpha-ketoglutarate permease, at 1,488,815 to 1,490,110 _06725 PS417_06730: PS417_06730 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,490,121 to 1,491,476 _06730 PS417_06735: PS417_06735 - 3-oxoadipate enol-lactonase, at 1,491,487 to 1,492,278 _06735 PS417_06740: PS417_06740 - 4-carboxymuconolactone decarboxylase, at 1,492,289 to 1,492,687 _06740 Position (kb) 1490 1491 1492Strain fitness (log2 ratio) -2 -1 0 1 2at 1489.148 kb on + strand, within PS417_06725at 1489.148 kb on + strand, within PS417_06725at 1489.245 kb on - strand, within PS417_06725at 1489.245 kb on - strand, within PS417_06725at 1489.245 kb on - strand, within PS417_06725at 1489.298 kb on + strand, within PS417_06725at 1489.302 kb on + strand, within PS417_06725at 1489.303 kb on - strand, within PS417_06725at 1489.598 kb on + strand, within PS417_06725at 1489.598 kb on + strand, within PS417_06725at 1489.598 kb on + strand, within PS417_06725at 1489.599 kb on - strand, within PS417_06725at 1489.599 kb on - strand, within PS417_06725at 1489.652 kb on + strand, within PS417_06725at 1489.652 kb on + strand, within PS417_06725at 1489.652 kb on + strand, within PS417_06725at 1489.653 kb on - strand, within PS417_06725at 1489.653 kb on - strand, within PS417_06725at 1489.653 kb on - strand, within PS417_06725at 1489.863 kb on - strand, within PS417_06725at 1489.926 kb on + strand, within PS417_06725at 1489.976 kb on + strand, within PS417_06725at 1490.021 kb on + strandat 1490.022 kb on - strandat 1490.022 kb on - strandat 1490.027 kb on + strandat 1490.028 kb on - strandat 1490.106 kb on + strandat 1490.107 kb on - strandat 1490.107 kb on - strandat 1490.107 kb on - strandat 1490.158 kb on - strandat 1490.158 kb on - strandat 1490.586 kb on - strand, within PS417_06730at 1491.145 kb on + strand, within PS417_06730at 1491.497 kb on + strandat 1491.497 kb on + strandat 1491.497 kb on + strandat 1491.923 kb on + strand, within PS417_06735at 1492.058 kb on + strand, within PS417_06735at 1492.175 kb on + strand, within PS417_06735at 1492.201 kb on + strandat 1492.201 kb on + strandat 1492.202 kb on - strandat 1492.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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1,489,148 + PS417_06725 0.26 +0.4
1,489,148 + PS417_06725 0.26 -0.3
1,489,245 - PS417_06725 0.33 +0.2
1,489,245 - PS417_06725 0.33 -0.6
1,489,245 - PS417_06725 0.33 +0.3
1,489,298 + PS417_06725 0.37 +0.7
1,489,302 + PS417_06725 0.38 +0.7
1,489,303 - PS417_06725 0.38 -0.1
1,489,598 + PS417_06725 0.60 +1.3
1,489,598 + PS417_06725 0.60 -0.0
1,489,598 + PS417_06725 0.60 +0.5
1,489,599 - PS417_06725 0.60 +0.1
1,489,599 - PS417_06725 0.60 -0.9
1,489,652 + PS417_06725 0.65 +1.8
1,489,652 + PS417_06725 0.65 -1.8
1,489,652 + PS417_06725 0.65 -0.4
1,489,653 - PS417_06725 0.65 -0.6
1,489,653 - PS417_06725 0.65 +0.2
1,489,653 - PS417_06725 0.65 +0.7
1,489,863 - PS417_06725 0.81 +1.2
1,489,926 + PS417_06725 0.86 -1.1
1,489,976 + PS417_06725 0.90 +0.3
1,490,021 + +0.5
1,490,022 - +0.1
1,490,022 - +0.7
1,490,027 + -0.5
1,490,028 - -1.4
1,490,106 + +1.4
1,490,107 - +0.4
1,490,107 - +0.2
1,490,107 - +0.8
1,490,158 - +0.3
1,490,158 - +0.5
1,490,586 - PS417_06730 0.34 +2.2
1,491,145 + PS417_06730 0.76 +1.4
1,491,497 + +0.5
1,491,497 + +1.5
1,491,497 + -0.2
1,491,923 + PS417_06735 0.55 -0.0
1,492,058 + PS417_06735 0.72 +0.3
1,492,175 + PS417_06735 0.87 -0.0
1,492,201 + -0.2
1,492,201 + +0.3
1,492,202 - -2.6
1,492,202 - +0.3

Or see this region's nucleotide sequence