Strain Fitness in Pseudomonas simiae WCS417 around PS417_06085

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06075 and PS417_06080 overlap by 1 nucleotidesPS417_06080 and PS417_06085 are separated by 27 nucleotidesPS417_06085 and PS417_06090 are separated by 27 nucleotidesPS417_06090 and PS417_06095 are separated by 3 nucleotides PS417_06075: PS417_06075 - hypothetical protein, at 1,348,133 to 1,348,423 _06075 PS417_06080: PS417_06080 - hypothetical protein, at 1,348,423 to 1,349,283 _06080 PS417_06085: PS417_06085 - 2-methylisocitrate lyase, at 1,349,311 to 1,350,138 _06085 PS417_06090: PS417_06090 - extensin, at 1,350,166 to 1,350,840 _06090 PS417_06095: PS417_06095 - energy transducer TonB, at 1,350,844 to 1,351,464 _06095 Position (kb) 1349 1350 1351Strain fitness (log2 ratio) -3 -2 -1 0 1at 1348.358 kb on + strand, within PS417_06075at 1348.435 kb on + strandat 1348.436 kb on - strandat 1348.438 kb on + strandat 1348.480 kb on + strandat 1348.567 kb on + strand, within PS417_06080at 1348.567 kb on + strand, within PS417_06080at 1348.567 kb on + strand, within PS417_06080at 1348.568 kb on - strand, within PS417_06080at 1348.568 kb on - strand, within PS417_06080at 1348.568 kb on - strand, within PS417_06080at 1348.770 kb on + strand, within PS417_06080at 1348.770 kb on + strand, within PS417_06080at 1348.771 kb on - strand, within PS417_06080at 1348.839 kb on - strand, within PS417_06080at 1348.918 kb on - strand, within PS417_06080at 1348.918 kb on - strand, within PS417_06080at 1349.141 kb on + strand, within PS417_06080at 1349.141 kb on + strand, within PS417_06080at 1349.142 kb on - strand, within PS417_06080at 1349.142 kb on - strand, within PS417_06080at 1349.142 kb on - strand, within PS417_06080at 1349.142 kb on - strand, within PS417_06080at 1349.142 kb on - strand, within PS417_06080at 1349.690 kb on - strand, within PS417_06085at 1349.863 kb on + strand, within PS417_06085at 1349.863 kb on + strand, within PS417_06085at 1349.936 kb on + strand, within PS417_06085at 1349.937 kb on - strand, within PS417_06085at 1349.937 kb on - strand, within PS417_06085at 1350.064 kb on + strandat 1350.064 kb on + strandat 1350.065 kb on - strandat 1350.065 kb on - strandat 1350.065 kb on - strandat 1350.408 kb on + strand, within PS417_06090at 1350.560 kb on + strand, within PS417_06090at 1350.560 kb on + strand, within PS417_06090at 1350.582 kb on + strand, within PS417_06090at 1350.583 kb on - strand, within PS417_06090at 1350.583 kb on - strand, within PS417_06090at 1350.583 kb on - strandat 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.778 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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1,348,358 + PS417_06075 0.77 -0.2
1,348,435 + +0.4
1,348,436 - +1.5
1,348,438 + +0.3
1,348,480 + -0.3
1,348,567 + PS417_06080 0.17 +0.6
1,348,567 + PS417_06080 0.17 +1.2
1,348,567 + PS417_06080 0.17 +0.8
1,348,568 - PS417_06080 0.17 +0.4
1,348,568 - PS417_06080 0.17 -0.9
1,348,568 - PS417_06080 0.17 -0.5
1,348,770 + PS417_06080 0.40 +0.1
1,348,770 + PS417_06080 0.40 +0.4
1,348,771 - PS417_06080 0.40 +0.7
1,348,839 - PS417_06080 0.48 +1.3
1,348,918 - PS417_06080 0.57 +0.2
1,348,918 - PS417_06080 0.57 +1.2
1,349,141 + PS417_06080 0.83 -1.5
1,349,141 + PS417_06080 0.83 +0.4
1,349,142 - PS417_06080 0.84 +0.2
1,349,142 - PS417_06080 0.84 -0.3
1,349,142 - PS417_06080 0.84 -0.7
1,349,142 - PS417_06080 0.84 -1.0
1,349,142 - PS417_06080 0.84 +0.6
1,349,690 - PS417_06085 0.46 +0.1
1,349,863 + PS417_06085 0.67 -0.2
1,349,863 + PS417_06085 0.67 -1.5
1,349,936 + PS417_06085 0.75 +0.3
1,349,937 - PS417_06085 0.76 -0.2
1,349,937 - PS417_06085 0.76 +0.6
1,350,064 + -0.7
1,350,064 + +0.5
1,350,065 - -1.0
1,350,065 - +0.7
1,350,065 - +0.6
1,350,408 + PS417_06090 0.36 -0.1
1,350,560 + PS417_06090 0.58 +0.1
1,350,560 + PS417_06090 0.58 +0.6
1,350,582 + PS417_06090 0.62 +0.1
1,350,583 - PS417_06090 0.62 -0.7
1,350,583 - PS417_06090 0.62 +0.4
1,350,583 - +0.5
1,350,586 + PS417_06090 0.62 +0.4
1,350,586 + PS417_06090 0.62 +1.1
1,350,586 + PS417_06090 0.62 -0.7
1,350,586 + PS417_06090 0.62 -0.0
1,350,586 + PS417_06090 0.62 -0.5
1,350,587 - PS417_06090 0.62 -0.2
1,350,587 - PS417_06090 0.62 +0.5
1,350,587 - PS417_06090 0.62 -1.7
1,350,587 - PS417_06090 0.62 +0.8
1,350,587 - PS417_06090 0.62 -3.4
1,350,587 - PS417_06090 0.62 +1.4
1,350,587 - PS417_06090 0.62 -1.0
1,350,587 - PS417_06090 0.62 +0.7
1,350,587 - PS417_06090 0.62 +0.1
1,350,778 + +0.2

Or see this region's nucleotide sequence