Strain Fitness in Pseudomonas putida KT2440 around PP_2487

Experiment: L-Pipecolic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Pipecolic Acid (N)
2,832,912	+		PP_2486	0.17	-0.7
2,832,913	-		PP_2486	0.17	+0.7
2,832,924	+		PP_2486	0.18	+0.4
2,832,949	+		PP_2486	0.20	+0.2
2,832,949	+				+1.2
2,832,950	-		PP_2486	0.21	+0.4
2,832,950	-		PP_2486	0.21	-0.1
2,832,950	-		PP_2486	0.21	-0.4
2,833,021	-		PP_2486	0.27	+0.9
2,833,094	+		PP_2486	0.33	-0.4
2,833,094	+		PP_2486	0.33	-0.0
2,833,095	-		PP_2486	0.33	+0.7
2,833,098	+		PP_2486	0.34	+0.4
2,833,098	+		PP_2486	0.34	+0.5
2,833,099	-		PP_2486	0.34	+0.5
2,833,101	-		PP_2486	0.34	-0.1
2,833,230	+		PP_2486	0.45	+0.5
2,833,253	-		PP_2486	0.47	-0.4
2,833,253	-		PP_2486	0.47	+0.3
2,833,253	-		PP_2486	0.47	-0.3
2,833,350	+		PP_2486	0.56	+0.1
2,833,358	-		PP_2486	0.57	+0.2
2,833,358	-		PP_2486	0.57	+0.1
2,833,370	+		PP_2486	0.58	-0.3
2,833,371	-				+1.2
2,833,588	+		PP_2486	0.77	+0.0
2,833,601	+		PP_2486	0.78	+0.0
2,833,601	+		PP_2486	0.78	+1.4
2,833,601	+		PP_2486	0.78	+0.3
2,833,602	-		PP_2486	0.78	+0.6
2,833,602	-		PP_2486	0.78	-0.7
2,833,602	-		PP_2486	0.78	-0.2
2,833,602	-		PP_2486	0.78	-0.1
2,833,602	-		PP_2486	0.78	+0.7
2,833,602	-		PP_2486	0.78	-0.6
2,833,615	+		PP_2486	0.80	+1.0
2,833,707	+		PP_2486	0.88	-0.5
2,833,710	+		PP_2486	0.88	-0.4
2,833,710	+		PP_2486	0.88	+0.2
2,833,710	+		PP_2486	0.88	+0.4
2,833,711	-		PP_2486	0.88	-1.0
2,833,711	-		PP_2486	0.88	+0.2
2,833,711	-		PP_2486	0.88	-0.1
2,833,778	+				+0.5
2,833,783	+				-0.3
2,833,800	+				+0.1
2,833,800	+				+0.8
2,833,800	+				+0.2
2,833,801	-				-0.3
2,833,801	-				-0.2
2,833,801	-				+0.3
2,833,801	-				+0.5
2,833,858	+				-0.2
2,833,863	-				+0.2
2,833,943	+				-0.2
2,833,943	+				+0.6
2,833,944	-				-0.3
2,833,944	-				+0.5
2,833,964	+				+0.4
2,833,964	+				-0.6
2,833,964	+				-0.6
2,833,964	+				-1.2
2,833,964	+				-0.4
2,833,964	+				+0.3
2,834,015	+				-0.3
2,834,051	+				+0.1
2,834,052	-				+0.4
2,834,052	-				+0.6
2,834,052	-				-0.6
2,834,052	-				+0.2
2,834,055	+				+0.6
2,834,055	+				-0.4
2,834,055	+				+0.7
2,834,055	+				+0.0
2,834,055	+				+0.2
2,834,055	+				+0.7
2,834,056	-				+0.9
2,834,056	-				-0.9
2,834,056	-				+0.1
2,834,056	-				+0.4
2,834,059	+		PP_2487	0.10	+0.5
2,834,060	-		PP_2487	0.10	+0.8
2,834,060	-		PP_2487	0.10	-1.0
2,834,067	+				+1.2
2,834,067	+		PP_2487	0.11	-0.2
2,834,067	+		PP_2487	0.11	+0.0
2,834,067	+		PP_2487	0.11	+0.7
2,834,067	+		PP_2487	0.11	-0.6
2,834,068	+		PP_2487	0.11	+0.4
2,834,068	-		PP_2487	0.11	-0.3
2,834,068	-		PP_2487	0.11	-0.0
2,834,068	-		PP_2487	0.11	+0.5
2,834,145	-		PP_2487	0.16	+0.1
2,834,228	+		PP_2487	0.21	+0.4
2,834,229	-		PP_2487	0.21	-1.6
2,834,242	-		PP_2487	0.22	+0.2
2,834,242	-		PP_2487	0.22	-0.4
2,834,294	+		PP_2487	0.26	+0.6
2,834,307	+		PP_2487	0.27	-0.1
2,834,307	+		PP_2487	0.27	-0.3
2,834,308	-		PP_2487	0.27	+0.1
2,834,308	-		PP_2487	0.27	+0.3
2,834,329	+		PP_2487	0.28	+0.2
2,834,330	-		PP_2487	0.28	+0.4
2,834,330	-		PP_2487	0.28	+1.1
2,834,364	-		PP_2487	0.30	+0.1
2,834,457	+		PP_2487	0.36	-0.7
2,834,457	+		PP_2487	0.36	+0.2
2,834,457	+		PP_2487	0.36	-0.1
2,834,457	+		PP_2487	0.36	+0.2
2,834,458	-		PP_2487	0.37	-1.1
2,834,486	+		PP_2487	0.38	-0.6
2,834,486	+		PP_2487	0.38	-0.6
2,834,486	+		PP_2487	0.38	+0.3
2,834,713	+		PP_2487	0.53	+0.6
2,834,713	+		PP_2487	0.53	+0.3
2,834,714	-				-0.4
2,834,732	-		PP_2487	0.55	+0.2
2,834,755	+		PP_2487	0.56	-0.7
2,834,791	+		PP_2487	0.59	-0.0
2,834,792	-		PP_2487	0.59	-0.9
2,834,792	-		PP_2487	0.59	+0.7
2,834,792	-		PP_2487	0.59	+0.4
2,834,812	+		PP_2487	0.60	-0.1
2,834,828	-		PP_2487	0.61	-0.0
2,834,853	+		PP_2487	0.63	+1.2
2,834,854	-		PP_2487	0.63	+0.1
2,834,857	+		PP_2487	0.63	+0.9
2,834,857	+		PP_2487	0.63	+0.2
2,834,857	+		PP_2487	0.63	-0.1
2,834,858	-		PP_2487	0.63	-0.1
2,834,858	-		PP_2487	0.63	+0.0
2,834,904	+		PP_2487	0.66	+0.3
2,834,905	-		PP_2487	0.66	-0.4
2,834,905	-		PP_2487	0.66	+0.5
2,835,094	+		PP_2487	0.79	+0.3
2,835,192	+		PP_2487	0.85	-0.0
2,835,192	+		PP_2487	0.85	+1.4
2,835,193	-		PP_2487	0.85	-0.1
2,835,193	-		PP_2487	0.85	+0.2
2,835,298	-				+0.4
2,835,298	-				+0.0
2,835,298	-				+0.5
2,835,318	-				-0.6
2,835,356	+				+0.3
2,835,410	+				-0.1
2,835,411	-				-0.6
2,835,411	-				+0.5
2,835,427	-				+0.4
2,835,436	+				-0.3
2,835,436	+				-0.1
2,835,498	+				+0.1
2,835,498	+				+0.2
2,835,498	+				-0.6
2,835,498	+				+0.4
2,835,498	+				-0.3
2,835,498	+				+0.3
2,835,498	+				+1.0
2,835,498	+				-0.6
2,835,498	+				-0.2
2,835,498	+				+2.2
2,835,498	+				+0.6
2,835,498	+				-0.1
2,835,498	+				+0.4
2,835,498	+				+0.1
2,835,498	+				-0.4
2,835,499	-				+0.4
2,835,499	-				-0.0
2,835,499	-				+0.3
2,835,499	-				+0.9
2,835,499	-				-0.4
2,835,499	-				-0.9
2,835,499	-				-0.3
2,835,499	-				+0.0
2,835,504	+				-0.9
2,835,505	-				+0.8
2,835,505	-				-1.2
2,835,505	-				+0.9
2,835,505	-				+0.3
2,835,505	-				+0.8
2,835,573	+				+0.1
2,835,573	+				+0.0
2,835,573	+				+0.1
2,835,573	+				+0.9
2,835,574	-				+0.0
2,835,574	-				-1.0
2,835,574	-				-0.0
2,835,574	-				-1.4
2,835,577	+				+0.3
2,835,577	+				-0.0
2,835,577	+				+0.1
2,835,577	+				+0.3
2,835,578	-				+2.5
2,835,578	-				+0.5
2,835,578	-				+1.1
2,835,578	-				-0.4
2,835,598	-				+0.1
2,835,598	-				-0.2
2,835,658	+				-0.3
2,835,659	-				+0.5
2,835,659	-				+0.7
2,835,674	+				-0.1
2,835,686	+				+0.0
2,835,686	+				-0.8
2,835,729	+				+0.2
2,835,730	-				+0.3
2,835,812	+		PP_2488	0.11	-1.5
2,835,812	+		PP_2488	0.11	+0.3
2,835,813	-		PP_2488	0.11	+0.3
2,835,813	-		PP_2488	0.11	+0.3
2,835,813	-		PP_2488	0.11	-1.2
2,835,851	+		PP_2488	0.14	+0.3
2,835,851	+		PP_2488	0.14	-0.2
2,835,851	+		PP_2488	0.14	+0.3
2,835,852	-		PP_2488	0.14	-0.1
2,835,852	-		PP_2488	0.14	-0.2
2,835,852	-		PP_2488	0.14	-0.5
2,835,852	-		PP_2488	0.14	+0.3
2,835,852	-		PP_2488	0.14	-0.7
2,835,852	-		PP_2488	0.14	-0.6
2,835,852	-		PP_2488	0.14	-0.3
2,835,854	+		PP_2488	0.14	-0.5
2,835,854	+		PP_2488	0.14	+0.2
2,835,905	+		PP_2488	0.18	+0.1
2,835,970	+		PP_2488	0.22	-0.3
2,835,970	+		PP_2488	0.22	+0.2
2,835,971	-		PP_2488	0.23	-0.1
2,835,971	-		PP_2488	0.23	+0.1
2,835,994	-		PP_2488	0.24	+0.2
2,835,994	-		PP_2488	0.24	+1.9
2,836,007	+		PP_2488	0.25	-1.4
2,836,007	+		PP_2488	0.25	+0.6
2,836,008	-		PP_2488	0.25	+0.1
2,836,034	+		PP_2488	0.27	+0.7
2,836,172	+		PP_2488	0.37	-0.8
2,836,172	+		PP_2488	0.37	+0.5
2,836,173	-		PP_2488	0.37	-0.4
2,836,196	-		PP_2488	0.39	-0.2
2,836,216	+		PP_2488	0.40	+0.7
2,836,216	+		PP_2488	0.40	-0.9
2,836,217	-		PP_2488	0.40	-0.3
2,836,217	-		PP_2488	0.40	-1.6
2,836,253	+		PP_2488	0.43	-0.4
2,836,253	+		PP_2488	0.43	+0.3
2,836,254	-		PP_2488	0.43	-0.1
2,836,307	+		PP_2488	0.47	+0.6
2,836,308	-		PP_2488	0.47	-1.0
2,836,308	-		PP_2488	0.47	-0.1
2,836,353	+		PP_2488	0.50	-0.3
2,836,353	+		PP_2488	0.50	+0.3
2,836,354	-		PP_2488	0.50	+0.1