Strain Fitness in Pseudomonas putida KT2440 around PP_0595

Experiment: Uracil (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0593 and PP_0594 are separated by 9 nucleotidesPP_0594 and PP_0595 are separated by 9 nucleotidesPP_0595 and PP_0596 are separated by 118 nucleotides PP_0593: PP_0593 - putative ribosome-binding factor, at 691,777 to 692,361 _0593 PP_0594: PP_0594 - Transcriptional regulator, TetR family, at 692,371 to 693,114 _0594 PP_0595: PP_0595 - Transcriptional regulator, LysR family, at 693,124 to 694,041 _0595 PP_0596: PP_0596 - Omega-amino acid--pyruvate aminotransferase, at 694,160 to 695,506 _0596 Position (kb) 693 694 695Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 692.331 kb on - strandat 692.352 kb on + strandat 692.352 kb on + strandat 692.352 kb on + strandat 692.353 kb on - strandat 692.353 kb on - strandat 692.361 kb on + strandat 692.361 kb on + strandat 692.362 kb on - strandat 692.362 kb on - strandat 692.362 kb on - strandat 692.415 kb on + strandat 692.415 kb on + strandat 692.416 kb on - strandat 692.502 kb on - strand, within PP_0594at 692.540 kb on - strand, within PP_0594at 692.540 kb on - strand, within PP_0594at 692.587 kb on + strand, within PP_0594at 692.633 kb on + strand, within PP_0594at 692.633 kb on + strand, within PP_0594at 692.633 kb on + strand, within PP_0594at 692.729 kb on + strand, within PP_0594at 692.729 kb on + strand, within PP_0594at 692.730 kb on - strand, within PP_0594at 692.730 kb on - strand, within PP_0594at 692.822 kb on + strand, within PP_0594at 692.822 kb on + strand, within PP_0594at 692.822 kb on + strand, within PP_0594at 692.823 kb on - strand, within PP_0594at 692.823 kb on - strand, within PP_0594at 692.823 kb on - strand, within PP_0594at 692.847 kb on - strand, within PP_0594at 692.847 kb on - strand, within PP_0594at 692.847 kb on - strand, within PP_0594at 692.849 kb on + strand, within PP_0594at 692.849 kb on + strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.859 kb on + strand, within PP_0594at 692.860 kb on - strand, within PP_0594at 692.931 kb on - strand, within PP_0594at 692.950 kb on - strand, within PP_0594at 692.976 kb on + strand, within PP_0594at 693.025 kb on + strand, within PP_0594at 693.026 kb on - strand, within PP_0594at 693.026 kb on - strand, within PP_0594at 693.026 kb on - strand, within PP_0594at 693.027 kb on - strand, within PP_0594at 693.078 kb on + strandat 693.079 kb on - strandat 693.276 kb on - strand, within PP_0595at 693.276 kb on - strand, within PP_0595at 693.291 kb on - strand, within PP_0595at 693.291 kb on - strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.298 kb on - strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.300 kb on - strand, within PP_0595at 693.309 kb on + strand, within PP_0595at 693.371 kb on + strand, within PP_0595at 693.372 kb on - strand, within PP_0595at 693.372 kb on - strand, within PP_0595at 693.464 kb on + strand, within PP_0595at 693.525 kb on - strand, within PP_0595at 693.678 kb on + strand, within PP_0595at 693.679 kb on - strand, within PP_0595at 693.679 kb on - strand, within PP_0595at 693.809 kb on + strand, within PP_0595at 693.810 kb on - strand, within PP_0595at 693.810 kb on - strand, within PP_0595at 693.931 kb on + strand, within PP_0595at 693.978 kb on - strandat 693.978 kb on - strandat 694.042 kb on + strandat 694.042 kb on + strandat 694.043 kb on - strandat 694.043 kb on - strandat 694.070 kb on - strandat 694.094 kb on + strandat 694.111 kb on - strandat 694.137 kb on - strandat 694.230 kb on - strandat 694.230 kb on - strandat 694.289 kb on + strandat 694.290 kb on - strandat 694.290 kb on - strandat 694.403 kb on - strand, within PP_0596at 694.412 kb on + strand, within PP_0596at 694.412 kb on + strand, within PP_0596at 694.505 kb on + strand, within PP_0596at 694.505 kb on + strand, within PP_0596at 694.505 kb on + strand, within PP_0596at 694.505 kb on + strand, within PP_0596at 694.506 kb on - strand, within PP_0596at 694.506 kb on - strand, within PP_0596at 694.507 kb on + strand, within PP_0596at 694.559 kb on + strand, within PP_0596at 694.560 kb on - strand, within PP_0596at 694.616 kb on + strand, within PP_0596at 694.617 kb on - strand, within PP_0596at 694.639 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.717 kb on - strand, within PP_0596at 694.717 kb on - strand, within PP_0596at 694.881 kb on - strand, within PP_0596

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil (N)
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692,331 - +0.5
692,352 + +0.4
692,352 + +0.9
692,352 + -0.3
692,353 - -1.5
692,353 - -0.1
692,361 + -0.3
692,361 + +0.4
692,362 - -0.4
692,362 - +0.5
692,362 - +0.3
692,415 + +0.4
692,415 + +0.1
692,416 - -0.1
692,502 - PP_0594 0.18 -0.7
692,540 - PP_0594 0.23 -0.4
692,540 - PP_0594 0.23 +0.8
692,587 + PP_0594 0.29 +0.2
692,633 + PP_0594 0.35 +0.1
692,633 + PP_0594 0.35 -0.5
692,633 + PP_0594 0.35 +0.8
692,729 + PP_0594 0.48 +0.8
692,729 + PP_0594 0.48 -0.5
692,730 - PP_0594 0.48 -1.2
692,730 - PP_0594 0.48 +0.2
692,822 + PP_0594 0.61 -0.2
692,822 + PP_0594 0.61 -0.4
692,822 + PP_0594 0.61 +0.1
692,823 - PP_0594 0.61 +0.0
692,823 - PP_0594 0.61 -0.5
692,823 - PP_0594 0.61 +0.3
692,847 - PP_0594 0.64 +0.0
692,847 - PP_0594 0.64 +0.8
692,847 - PP_0594 0.64 -0.8
692,849 + PP_0594 0.64 +0.6
692,849 + PP_0594 0.64 -0.1
692,850 - PP_0594 0.64 -0.3
692,850 - PP_0594 0.64 -0.0
692,850 - PP_0594 0.64 +1.0
692,850 - PP_0594 0.64 -0.9
692,859 + PP_0594 0.66 +0.1
692,860 - PP_0594 0.66 +0.7
692,931 - PP_0594 0.75 -0.7
692,950 - PP_0594 0.78 +0.2
692,976 + PP_0594 0.81 -0.9
693,025 + PP_0594 0.88 +0.2
693,026 - PP_0594 0.88 +0.5
693,026 - PP_0594 0.88 -0.2
693,026 - PP_0594 0.88 +0.2
693,027 - PP_0594 0.88 +0.6
693,078 + +0.3
693,079 - -0.2
693,276 - PP_0595 0.17 +0.7
693,276 - PP_0595 0.17 -3.2
693,291 - PP_0595 0.18 -1.3
693,291 - PP_0595 0.18 -2.9
693,297 + PP_0595 0.19 -3.8
693,297 + PP_0595 0.19 -1.1
693,297 + PP_0595 0.19 -1.2
693,298 - PP_0595 0.19 -2.6
693,299 + PP_0595 0.19 -1.6
693,299 + PP_0595 0.19 -2.0
693,299 + PP_0595 0.19 -2.0
693,299 + PP_0595 0.19 -0.8
693,299 + PP_0595 0.19 -1.0
693,299 + PP_0595 0.19 -0.7
693,300 - PP_0595 0.19 -2.8
693,309 + PP_0595 0.20 -2.4
693,371 + PP_0595 0.27 -2.9
693,372 - PP_0595 0.27 -2.4
693,372 - PP_0595 0.27 -3.7
693,464 + PP_0595 0.37 -2.3
693,525 - PP_0595 0.44 -4.0
693,678 + PP_0595 0.60 -0.6
693,679 - PP_0595 0.60 -2.6
693,679 - PP_0595 0.60 -3.7
693,809 + PP_0595 0.75 -0.5
693,810 - PP_0595 0.75 -2.3
693,810 - PP_0595 0.75 -4.0
693,931 + PP_0595 0.88 -0.8
693,978 - -2.9
693,978 - -3.8
694,042 + +0.3
694,042 + +0.3
694,043 - +0.2
694,043 - -0.6
694,070 - -3.5
694,094 + -0.1
694,111 - -4.3
694,137 - -3.0
694,230 - -1.1
694,230 - -4.8
694,289 + -1.5
694,290 - +1.7
694,290 - -2.9
694,403 - PP_0596 0.18 -2.8
694,412 + PP_0596 0.19 -5.8
694,412 + PP_0596 0.19 -3.9
694,505 + PP_0596 0.26 -2.3
694,505 + PP_0596 0.26 -2.3
694,505 + PP_0596 0.26 -2.8
694,505 + PP_0596 0.26 -4.3
694,506 - PP_0596 0.26 -4.3
694,506 - PP_0596 0.26 -4.1
694,507 + PP_0596 0.26 -4.1
694,559 + PP_0596 0.30 -4.8
694,560 - PP_0596 0.30 -5.3
694,616 + PP_0596 0.34 -3.9
694,617 - PP_0596 0.34 -4.0
694,639 + PP_0596 0.36 -3.3
694,716 + PP_0596 0.41 -4.1
694,716 + PP_0596 0.41 -4.4
694,716 + PP_0596 0.41 -3.8
694,716 + PP_0596 0.41 -2.9
694,716 + PP_0596 0.41 -5.0
694,717 - PP_0596 0.41 -2.1
694,717 - PP_0596 0.41 -4.9
694,881 - PP_0596 0.54 -1.1

Or see this region's nucleotide sequence