Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0726 and PP_0727 overlap by 4 nucleotides PP_0727 and PP_0728 overlap by 4 nucleotides
PP_0726: PP_0726 - Transferase, at 843,518 to 844,243
_0726
PP_0727: PP_0727 - conserved protein of unknown function, at 844,240 to 844,842
_0727
PP_0728: PP_0728 - conserved protein of unknown function, at 844,839 to 846,008
_0728
Position (kb)
844
845 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 843.241 kb on - strand at 843.275 kb on + strand at 843.275 kb on + strand at 843.275 kb on + strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.276 kb on - strand at 843.288 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.312 kb on + strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.313 kb on - strand at 843.314 kb on + strand at 843.355 kb on - strand at 843.355 kb on - strand at 843.459 kb on - strand at 843.480 kb on + strand at 843.492 kb on + strand at 843.531 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.543 kb on + strand at 843.545 kb on + strand at 843.636 kb on - strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.741 kb on + strand, within PP_0726 at 843.742 kb on - strand at 843.742 kb on - strand, within PP_0726 at 843.742 kb on - strand, within PP_0726 at 843.784 kb on + strand, within PP_0726 at 843.806 kb on + strand, within PP_0726 at 843.879 kb on + strand, within PP_0726 at 843.892 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.907 kb on + strand, within PP_0726 at 843.908 kb on - strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.911 kb on + strand, within PP_0726 at 843.912 kb on - strand, within PP_0726 at 843.912 kb on - strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.920 kb on + strand, within PP_0726 at 843.923 kb on + strand, within PP_0726 at 843.923 kb on + strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.924 kb on - strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.951 kb on + strand, within PP_0726 at 843.952 kb on - strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.955 kb on + strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.956 kb on - strand, within PP_0726 at 843.998 kb on + strand, within PP_0726 at 843.998 kb on + strand, within PP_0726 at 844.039 kb on - strand, within PP_0726 at 844.142 kb on + strand, within PP_0726 at 844.143 kb on - strand, within PP_0726 at 844.143 kb on - strand, within PP_0726 at 844.159 kb on + strand, within PP_0726 at 844.159 kb on + strand, within PP_0726 at 844.166 kb on + strand, within PP_0726 at 844.167 kb on - strand, within PP_0726 at 844.202 kb on + strand at 844.202 kb on + strand at 844.298 kb on - strand at 844.329 kb on + strand, within PP_0727 at 844.349 kb on + strand, within PP_0727 at 844.350 kb on - strand, within PP_0727 at 844.350 kb on - strand, within PP_0727 at 844.350 kb on - strand, within PP_0727 at 844.384 kb on + strand, within PP_0727 at 844.385 kb on - strand, within PP_0727 at 844.387 kb on + strand, within PP_0727 at 844.388 kb on - strand, within PP_0727 at 844.388 kb on - strand, within PP_0727 at 844.422 kb on - strand, within PP_0727 at 844.431 kb on - strand, within PP_0727 at 844.431 kb on - strand, within PP_0727 at 844.480 kb on + strand, within PP_0727 at 844.480 kb on + strand, within PP_0727 at 844.480 kb on + strand, within PP_0727 at 844.481 kb on - strand at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.481 kb on - strand, within PP_0727 at 844.528 kb on + strand, within PP_0727 at 844.528 kb on + strand, within PP_0727 at 844.529 kb on - strand, within PP_0727 at 844.547 kb on - strand, within PP_0727 at 844.547 kb on - strand, within PP_0727 at 844.657 kb on - strand, within PP_0727 at 844.691 kb on - strand, within PP_0727 at 844.725 kb on - strand, within PP_0727 at 844.751 kb on - strand, within PP_0727 at 844.751 kb on - strand, within PP_0727 at 844.855 kb on - strand at 844.855 kb on - strand at 844.855 kb on - strand at 844.856 kb on + strand at 844.899 kb on + strand at 844.900 kb on - strand at 844.931 kb on + strand at 844.970 kb on + strand, within PP_0728 at 844.970 kb on + strand, within PP_0728 at 844.970 kb on + strand, within PP_0728 at 844.970 kb on + strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 844.971 kb on - strand, within PP_0728 at 845.076 kb on + strand, within PP_0728 at 845.077 kb on - strand, within PP_0728 at 845.077 kb on - strand, within PP_0728 at 845.179 kb on - strand, within PP_0728 at 845.217 kb on + strand, within PP_0728 at 845.349 kb on + strand, within PP_0728 at 845.349 kb on + strand, within PP_0728 at 845.350 kb on - strand, within PP_0728 at 845.350 kb on - strand, within PP_0728 at 845.367 kb on + strand, within PP_0728 at 845.368 kb on - strand, within PP_0728 at 845.401 kb on + strand, within PP_0728 at 845.402 kb on - strand, within PP_0728 at 845.402 kb on - strand, within PP_0728 at 845.402 kb on - strand, within PP_0728 at 845.407 kb on + strand, within PP_0728 at 845.408 kb on - strand, within PP_0728 at 845.408 kb on - strand, within PP_0728 at 845.408 kb on - strand, within PP_0728 at 845.432 kb on + strand, within PP_0728 at 845.475 kb on - strand, within PP_0728 at 845.526 kb on + strand, within PP_0728 at 845.526 kb on + strand, within PP_0728 at 845.526 kb on + strand, within PP_0728 at 845.527 kb on - strand, within PP_0728 at 845.562 kb on + strand, within PP_0728 at 845.563 kb on - strand, within PP_0728 at 845.584 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.619 kb on + strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.620 kb on - strand, within PP_0728 at 845.626 kb on + strand, within PP_0728 at 845.626 kb on + strand, within PP_0728 at 845.626 kb on + strand, within PP_0728 at 845.626 kb on + strand, within PP_0728 at 845.627 kb on - strand, within PP_0728 at 845.627 kb on - strand at 845.630 kb on + strand, within PP_0728 at 845.672 kb on + strand, within PP_0728 at 845.673 kb on - strand, within PP_0728 at 845.673 kb on - strand, within PP_0728 at 845.673 kb on - strand, within PP_0728 at 845.714 kb on + strand, within PP_0728 at 845.714 kb on + strand, within PP_0728 at 845.714 kb on + strand, within PP_0728 at 845.715 kb on - strand, within PP_0728 at 845.715 kb on - strand, within PP_0728 at 845.715 kb on - strand, within PP_0728 at 845.715 kb on - strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.754 kb on + strand, within PP_0728 at 845.755 kb on - strand, within PP_0728 at 845.757 kb on + strand, within PP_0728 at 845.758 kb on - strand, within PP_0728 at 845.784 kb on + strand, within PP_0728 at 845.784 kb on + strand, within PP_0728 at 845.796 kb on + strand, within PP_0728 at 845.796 kb on + strand, within PP_0728
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 843,241 - -0.3 843,275 + +0.3 843,275 + +0.3 843,275 + -0.5 843,276 - +0.1 843,276 - -1.8 843,276 - +0.2 843,276 - +0.1 843,288 + +0.5 843,312 + -0.3 843,312 + -0.4 843,312 + +0.2 843,312 + +0.4 843,312 + -2.1 843,312 + -1.1 843,312 + +0.6 843,312 + +0.3 843,313 - +0.8 843,313 - +0.8 843,313 - -1.3 843,313 - -0.1 843,313 - +0.3 843,313 - +0.5 843,314 + +0.9 843,355 - +0.0 843,355 - +0.2 843,459 - -1.2 843,480 + +1.2 843,492 + -0.5 843,531 + +0.5 843,543 + -0.6 843,543 + -0.2 843,543 + -0.1 843,543 + +0.1 843,545 + +0.0 843,636 - PP_0726 0.16 -0.4 843,741 + PP_0726 0.31 -0.1 843,741 + PP_0726 0.31 -0.7 843,741 + PP_0726 0.31 -0.9 843,742 - +1.6 843,742 - PP_0726 0.31 +0.1 843,742 - PP_0726 0.31 -0.5 843,784 + PP_0726 0.37 -0.9 843,806 + PP_0726 0.40 -1.4 843,879 + PP_0726 0.50 -2.2 843,892 + PP_0726 0.52 +0.1 843,907 + PP_0726 0.54 -0.9 843,907 + PP_0726 0.54 -1.5 843,907 + PP_0726 0.54 -0.7 843,908 - PP_0726 0.54 +0.2 843,911 + PP_0726 0.54 +0.6 843,911 + PP_0726 0.54 +0.1 843,911 + PP_0726 0.54 -0.2 843,912 - PP_0726 0.54 -0.2 843,912 - PP_0726 0.54 +0.5 843,920 + PP_0726 0.55 +0.2 843,920 + PP_0726 0.55 +0.1 843,920 + PP_0726 0.55 +0.5 843,923 + PP_0726 0.56 -0.4 843,923 + PP_0726 0.56 +0.0 843,924 - PP_0726 0.56 -1.2 843,924 - PP_0726 0.56 +0.5 843,924 - PP_0726 0.56 +0.2 843,924 - PP_0726 0.56 -0.1 843,951 + PP_0726 0.60 -0.3 843,951 + PP_0726 0.60 -0.1 843,951 + PP_0726 0.60 -0.4 843,952 - PP_0726 0.60 -0.3 843,955 + PP_0726 0.60 +0.3 843,955 + PP_0726 0.60 -0.4 843,955 + PP_0726 0.60 +0.3 843,955 + PP_0726 0.60 +0.1 843,955 + PP_0726 0.60 -0.5 843,956 - PP_0726 0.60 +0.8 843,956 - PP_0726 0.60 +0.1 843,956 - PP_0726 0.60 +0.4 843,998 + PP_0726 0.66 +0.9 843,998 + PP_0726 0.66 +0.9 844,039 - PP_0726 0.72 +0.2 844,142 + PP_0726 0.86 +0.0 844,143 - PP_0726 0.86 -0.5 844,143 - PP_0726 0.86 +0.5 844,159 + PP_0726 0.88 -0.3 844,159 + PP_0726 0.88 -0.3 844,166 + PP_0726 0.89 +0.4 844,167 - PP_0726 0.89 +1.1 844,202 + +0.1 844,202 + +0.2 844,298 - -0.4 844,329 + PP_0727 0.15 -0.6 844,349 + PP_0727 0.18 -2.1 844,350 - PP_0727 0.18 -0.4 844,350 - PP_0727 0.18 -0.6 844,350 - PP_0727 0.18 -0.3 844,384 + PP_0727 0.24 -0.3 844,385 - PP_0727 0.24 -0.4 844,387 + PP_0727 0.24 +0.6 844,388 - PP_0727 0.25 -0.4 844,388 - PP_0727 0.25 -0.2 844,422 - PP_0727 0.30 +0.1 844,431 - PP_0727 0.32 +0.3 844,431 - PP_0727 0.32 +0.5 844,480 + PP_0727 0.40 +1.1 844,480 + PP_0727 0.40 -0.1 844,480 + PP_0727 0.40 +0.4 844,481 - +1.6 844,481 - PP_0727 0.40 +0.4 844,481 - PP_0727 0.40 +0.4 844,481 - PP_0727 0.40 -0.3 844,481 - PP_0727 0.40 +0.4 844,481 - PP_0727 0.40 +0.3 844,528 + PP_0727 0.48 +0.1 844,528 + PP_0727 0.48 -0.7 844,529 - PP_0727 0.48 +0.4 844,547 - PP_0727 0.51 -0.5 844,547 - PP_0727 0.51 -0.4 844,657 - PP_0727 0.69 +0.3 844,691 - PP_0727 0.75 -3.2 844,725 - PP_0727 0.80 +0.1 844,751 - PP_0727 0.85 -0.7 844,751 - PP_0727 0.85 -0.3 844,855 - +1.9 844,855 - +0.0 844,855 - +0.4 844,856 + +0.6 844,899 + -0.1 844,900 - -0.5 844,931 + -0.1 844,970 + PP_0728 0.11 -0.2 844,970 + PP_0728 0.11 +1.4 844,970 + PP_0728 0.11 -0.8 844,970 + PP_0728 0.11 +0.2 844,971 - PP_0728 0.11 +0.1 844,971 - PP_0728 0.11 -0.9 844,971 - PP_0728 0.11 -0.1 844,971 - PP_0728 0.11 -0.9 845,076 + PP_0728 0.20 +0.3 845,077 - PP_0728 0.20 +0.1 845,077 - PP_0728 0.20 -0.1 845,179 - PP_0728 0.29 +0.1 845,217 + PP_0728 0.32 +0.1 845,349 + PP_0728 0.44 +0.5 845,349 + PP_0728 0.44 +0.1 845,350 - PP_0728 0.44 -0.2 845,350 - PP_0728 0.44 +0.3 845,367 + PP_0728 0.45 -0.2 845,368 - PP_0728 0.45 -0.0 845,401 + PP_0728 0.48 +0.7 845,402 - PP_0728 0.48 +1.3 845,402 - PP_0728 0.48 -0.4 845,402 - PP_0728 0.48 +0.3 845,407 + PP_0728 0.49 -0.3 845,408 - PP_0728 0.49 +1.0 845,408 - PP_0728 0.49 +0.3 845,408 - PP_0728 0.49 -0.5 845,432 + PP_0728 0.51 -0.2 845,475 - PP_0728 0.54 -0.0 845,526 + PP_0728 0.59 -0.1 845,526 + PP_0728 0.59 -0.4 845,526 + PP_0728 0.59 -0.5 845,527 - PP_0728 0.59 -0.3 845,562 + PP_0728 0.62 -0.1 845,563 - PP_0728 0.62 -1.8 845,584 + PP_0728 0.64 +0.1 845,619 + PP_0728 0.67 +0.0 845,619 + PP_0728 0.67 -0.0 845,619 + PP_0728 0.67 -1.2 845,619 + PP_0728 0.67 -2.9 845,619 + PP_0728 0.67 -0.2 845,619 + PP_0728 0.67 +0.0 845,620 - PP_0728 0.67 -1.9 845,620 - PP_0728 0.67 +0.5 845,620 - PP_0728 0.67 -1.0 845,620 - PP_0728 0.67 -0.4 845,620 - PP_0728 0.67 +0.0 845,620 - PP_0728 0.67 -0.4 845,620 - PP_0728 0.67 -0.0 845,626 + PP_0728 0.67 -0.2 845,626 + PP_0728 0.67 -0.4 845,626 + PP_0728 0.67 -0.3 845,626 + PP_0728 0.67 -0.8 845,627 - PP_0728 0.67 +0.5 845,627 - -0.4 845,630 + PP_0728 0.68 +0.1 845,672 + PP_0728 0.71 -0.4 845,673 - PP_0728 0.71 -0.9 845,673 - PP_0728 0.71 +0.5 845,673 - PP_0728 0.71 +0.5 845,714 + PP_0728 0.75 -0.6 845,714 + PP_0728 0.75 -1.2 845,714 + PP_0728 0.75 -0.4 845,715 - PP_0728 0.75 -0.0 845,715 - PP_0728 0.75 +0.4 845,715 - PP_0728 0.75 +0.3 845,715 - PP_0728 0.75 +0.3 845,754 + PP_0728 0.78 +0.4 845,754 + PP_0728 0.78 -0.7 845,754 + PP_0728 0.78 -0.7 845,754 + PP_0728 0.78 -0.2 845,754 + PP_0728 0.78 +0.2 845,755 - PP_0728 0.78 -1.0 845,757 + PP_0728 0.78 -0.4 845,758 - PP_0728 0.79 +1.6 845,784 + PP_0728 0.81 -1.9 845,784 + PP_0728 0.81 +0.6 845,796 + PP_0728 0.82 -0.3 845,796 + PP_0728 0.82 +0.4
Or see this region's nucleotide sequence