Strain Fitness in Pseudomonas putida KT2440 around PP_5180

Experiment: Cadaverine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5179 and PP_5180 are separated by 71 nucleotidesPP_5180 and PP_5181 are separated by 156 nucleotides PP_5179: PP_5179 - spermidine/putrescine ABC transporter - ATP binding subunit, at 5,905,658 to 5,906,800 _5179 PP_5180: PP_5180 - spermidine/putrescine ABC transporter - periplasmic subunit, at 5,906,872 to 5,907,966 _5180 PP_5181: PP_5181 - spermidine/putrescine ABC transporter - periplasmic subunit, at 5,908,123 to 5,909,220 _5181 Position (kb) 5906 5907 5908Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5905.905 kb on + strand, within PP_5179at 5905.905 kb on + strand, within PP_5179at 5905.906 kb on - strand, within PP_5179at 5905.906 kb on - strand, within PP_5179at 5905.953 kb on + strand, within PP_5179at 5905.953 kb on + strand, within PP_5179at 5905.953 kb on + strand, within PP_5179at 5905.953 kb on + strand, within PP_5179at 5905.954 kb on - strand, within PP_5179at 5906.068 kb on + strand, within PP_5179at 5906.069 kb on - strand, within PP_5179at 5906.079 kb on + strand, within PP_5179at 5906.079 kb on + strand, within PP_5179at 5906.079 kb on + strand, within PP_5179at 5906.080 kb on - strand, within PP_5179at 5906.080 kb on - strand, within PP_5179at 5906.368 kb on - strand, within PP_5179at 5906.494 kb on - strand, within PP_5179at 5906.494 kb on - strand, within PP_5179at 5906.494 kb on - strand, within PP_5179at 5906.527 kb on - strand, within PP_5179at 5906.778 kb on + strandat 5906.845 kb on + strandat 5906.892 kb on - strandat 5906.978 kb on + strandat 5906.998 kb on + strand, within PP_5180at 5906.999 kb on - strand, within PP_5180at 5907.053 kb on + strand, within PP_5180at 5907.054 kb on - strand, within PP_5180at 5907.054 kb on - strand, within PP_5180at 5907.241 kb on + strand, within PP_5180at 5907.241 kb on + strand, within PP_5180at 5907.241 kb on + strand, within PP_5180at 5907.242 kb on - strand, within PP_5180at 5907.242 kb on - strand, within PP_5180at 5907.299 kb on + strand, within PP_5180at 5907.300 kb on - strand, within PP_5180at 5907.300 kb on - strand, within PP_5180at 5907.300 kb on - strand, within PP_5180at 5907.317 kb on + strand, within PP_5180at 5907.317 kb on + strand, within PP_5180at 5907.317 kb on + strand, within PP_5180at 5907.317 kb on + strand, within PP_5180at 5907.326 kb on + strand, within PP_5180at 5907.326 kb on + strand, within PP_5180at 5907.326 kb on + strand, within PP_5180at 5907.326 kb on + strand, within PP_5180at 5907.327 kb on - strand, within PP_5180at 5907.365 kb on + strand, within PP_5180at 5907.365 kb on + strand, within PP_5180at 5907.366 kb on - strand, within PP_5180at 5907.404 kb on + strand, within PP_5180at 5907.404 kb on + strand, within PP_5180at 5907.404 kb on + strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.405 kb on - strand, within PP_5180at 5907.554 kb on + strand, within PP_5180at 5907.554 kb on + strand, within PP_5180at 5907.555 kb on - strand, within PP_5180at 5907.582 kb on - strand, within PP_5180at 5907.582 kb on - strand, within PP_5180at 5907.654 kb on - strand, within PP_5180at 5907.860 kb on + strandat 5907.861 kb on - strandat 5907.874 kb on - strandat 5907.874 kb on - strandat 5907.875 kb on + strandat 5907.875 kb on + strandat 5907.876 kb on - strandat 5907.876 kb on - strandat 5907.876 kb on - strandat 5907.876 kb on - strandat 5907.876 kb on - strandat 5907.953 kb on - strandat 5907.961 kb on - strandat 5908.037 kb on - strandat 5908.037 kb on - strandat 5908.069 kb on + strandat 5908.070 kb on - strandat 5908.125 kb on - strandat 5908.199 kb on + strandat 5908.200 kb on - strandat 5908.200 kb on - strandat 5908.200 kb on - strandat 5908.229 kb on + strandat 5908.229 kb on + strandat 5908.358 kb on + strand, within PP_5181at 5908.358 kb on + strand, within PP_5181at 5908.371 kb on + strand, within PP_5181at 5908.372 kb on - strand, within PP_5181at 5908.407 kb on - strand, within PP_5181at 5908.407 kb on - strand, within PP_5181at 5908.407 kb on - strand, within PP_5181at 5908.413 kb on + strand, within PP_5181at 5908.439 kb on + strand, within PP_5181at 5908.439 kb on + strand, within PP_5181at 5908.439 kb on + strand, within PP_5181at 5908.440 kb on - strand, within PP_5181at 5908.440 kb on - strand, within PP_5181at 5908.440 kb on - strand, within PP_5181at 5908.517 kb on - strand, within PP_5181at 5908.550 kb on + strand, within PP_5181at 5908.551 kb on - strand, within PP_5181at 5908.568 kb on + strand, within PP_5181at 5908.569 kb on - strand, within PP_5181at 5908.569 kb on - strand, within PP_5181at 5908.655 kb on + strand, within PP_5181at 5908.656 kb on - strand, within PP_5181at 5908.805 kb on + strand, within PP_5181at 5908.805 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.830 kb on + strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.831 kb on - strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.832 kb on + strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.833 kb on - strand, within PP_5181at 5908.940 kb on + strand, within PP_5181at 5908.941 kb on - strand, within PP_5181

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadaverine (N)
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5,905,905 + PP_5179 0.22 -1.9
5,905,905 + PP_5179 0.22 -4.6
5,905,906 - PP_5179 0.22 -4.6
5,905,906 - PP_5179 0.22 -2.2
5,905,953 + PP_5179 0.26 -2.6
5,905,953 + PP_5179 0.26 -2.6
5,905,953 + PP_5179 0.26 -1.7
5,905,953 + PP_5179 0.26 -2.0
5,905,954 - PP_5179 0.26 -2.1
5,906,068 + PP_5179 0.36 -2.9
5,906,069 - PP_5179 0.36 -3.4
5,906,079 + PP_5179 0.37 -1.3
5,906,079 + PP_5179 0.37 -2.2
5,906,079 + PP_5179 0.37 -3.7
5,906,080 - PP_5179 0.37 -1.1
5,906,080 - PP_5179 0.37 -1.4
5,906,368 - PP_5179 0.62 -2.9
5,906,494 - PP_5179 0.73 -1.7
5,906,494 - PP_5179 0.73 -2.7
5,906,494 - PP_5179 0.73 +0.1
5,906,527 - PP_5179 0.76 -3.1
5,906,778 + -2.1
5,906,845 + -3.6
5,906,892 - +1.1
5,906,978 + -1.2
5,906,998 + PP_5180 0.12 -3.0
5,906,999 - PP_5180 0.12 +1.2
5,907,053 + PP_5180 0.17 -2.5
5,907,054 - PP_5180 0.17 +1.2
5,907,054 - PP_5180 0.17 +1.9
5,907,241 + PP_5180 0.34 -1.9
5,907,241 + PP_5180 0.34 -1.1
5,907,241 + PP_5180 0.34 -1.7
5,907,242 - PP_5180 0.34 +1.4
5,907,242 - PP_5180 0.34 +1.7
5,907,299 + PP_5180 0.39 -2.0
5,907,300 - PP_5180 0.39 +1.3
5,907,300 - PP_5180 0.39 +0.8
5,907,300 - PP_5180 0.39 +0.9
5,907,317 + PP_5180 0.41 -2.6
5,907,317 + PP_5180 0.41 -0.8
5,907,317 + PP_5180 0.41 -0.9
5,907,317 + PP_5180 0.41 -2.4
5,907,326 + PP_5180 0.41 -2.6
5,907,326 + PP_5180 0.41 -1.4
5,907,326 + PP_5180 0.41 -2.6
5,907,326 + PP_5180 0.41 -1.7
5,907,327 - PP_5180 0.42 -0.3
5,907,365 + PP_5180 0.45 -2.9
5,907,365 + PP_5180 0.45 -2.3
5,907,366 - PP_5180 0.45 +0.7
5,907,404 + PP_5180 0.49 -1.3
5,907,404 + PP_5180 0.49 -2.0
5,907,404 + PP_5180 0.49 -2.2
5,907,405 - PP_5180 0.49 +0.1
5,907,405 - PP_5180 0.49 -0.5
5,907,405 - PP_5180 0.49 +0.1
5,907,405 - PP_5180 0.49 -0.4
5,907,405 - PP_5180 0.49 -0.1
5,907,554 + PP_5180 0.62 -3.9
5,907,554 + PP_5180 0.62 -2.8
5,907,555 - PP_5180 0.62 -1.1
5,907,582 - PP_5180 0.65 +0.1
5,907,582 - PP_5180 0.65 -1.8
5,907,654 - PP_5180 0.71 -0.8
5,907,860 + -2.4
5,907,861 - -1.5
5,907,874 - -2.1
5,907,874 - -2.6
5,907,875 + -3.7
5,907,875 + -2.7
5,907,876 - -1.9
5,907,876 - -2.4
5,907,876 - -2.8
5,907,876 - -2.4
5,907,876 - -1.4
5,907,953 - -0.3
5,907,961 - -1.6
5,908,037 - -0.2
5,908,037 - +0.6
5,908,069 + -1.1
5,908,070 - +0.9
5,908,125 - -0.2
5,908,199 + +0.1
5,908,200 - -1.1
5,908,200 - -1.7
5,908,200 - -1.3
5,908,229 + -2.0
5,908,229 + -2.7
5,908,358 + PP_5181 0.21 -1.0
5,908,358 + PP_5181 0.21 -3.0
5,908,371 + PP_5181 0.23 -1.6
5,908,372 - PP_5181 0.23 -0.6
5,908,407 - PP_5181 0.26 -0.4
5,908,407 - PP_5181 0.26 -0.9
5,908,407 - PP_5181 0.26 -1.5
5,908,413 + PP_5181 0.26 -1.8
5,908,439 + PP_5181 0.29 -2.7
5,908,439 + PP_5181 0.29 -1.7
5,908,439 + PP_5181 0.29 -2.4
5,908,440 - PP_5181 0.29 -2.0
5,908,440 - PP_5181 0.29 -2.4
5,908,440 - PP_5181 0.29 -1.9
5,908,517 - PP_5181 0.36 -2.4
5,908,550 + PP_5181 0.39 -2.2
5,908,551 - PP_5181 0.39 -1.1
5,908,568 + PP_5181 0.41 -1.1
5,908,569 - PP_5181 0.41 -2.0
5,908,569 - PP_5181 0.41 -2.5
5,908,655 + PP_5181 0.48 -4.2
5,908,656 - PP_5181 0.49 -3.2
5,908,805 + PP_5181 0.62 -2.9
5,908,805 + PP_5181 0.62 -1.3
5,908,830 + PP_5181 0.64 -3.2
5,908,830 + PP_5181 0.64 -0.6
5,908,830 + PP_5181 0.64 -3.6
5,908,830 + PP_5181 0.64 -1.3
5,908,830 + PP_5181 0.64 -1.7
5,908,831 - PP_5181 0.64 -2.4
5,908,831 - PP_5181 0.64 -2.1
5,908,831 - PP_5181 0.64 -2.8
5,908,831 - PP_5181 0.64 -2.7
5,908,831 - PP_5181 0.64 -2.0
5,908,832 + PP_5181 0.65 -2.5
5,908,832 + PP_5181 0.65 -1.4
5,908,832 + PP_5181 0.65 -0.5
5,908,832 + PP_5181 0.65 -3.2
5,908,832 + PP_5181 0.65 -2.1
5,908,832 + PP_5181 0.65 -1.1
5,908,832 + PP_5181 0.65 -1.3
5,908,832 + PP_5181 0.65 -2.5
5,908,832 + PP_5181 0.65 -2.3
5,908,832 + PP_5181 0.65 -2.1
5,908,833 - PP_5181 0.65 -1.9
5,908,833 - PP_5181 0.65 -3.1
5,908,833 - PP_5181 0.65 -1.6
5,908,833 - PP_5181 0.65 -2.8
5,908,833 - PP_5181 0.65 -2.8
5,908,833 - PP_5181 0.65 -0.9
5,908,940 + PP_5181 0.74 -2.4
5,908,941 - PP_5181 0.74 -3.6

Or see this region's nucleotide sequence