Experiment: Cadaverine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2176 and PP_2177 are separated by 177 nucleotides PP_2177 and PP_2178 are separated by 27 nucleotides
PP_2176: PP_2176 - transcriptional regulator, LysR family, at 2,481,446 to 2,482,375
_2176
PP_2177: PP_2177 - putative transcriptional regulator, at 2,482,553 to 2,483,107
_2177
PP_2178: PP_2178 - glutamate-putrescine ligase, at 2,483,135 to 2,484,481
_2178
Position (kb)
2482
2483
2484 Strain fitness (log2 ratio)
-2
-1
0
1 at 2481.628 kb on + strand, within PP_2176 at 2481.628 kb on + strand, within PP_2176 at 2481.628 kb on + strand, within PP_2176 at 2481.897 kb on + strand, within PP_2176 at 2481.957 kb on - strand, within PP_2176 at 2481.962 kb on + strand, within PP_2176 at 2481.962 kb on + strand, within PP_2176 at 2482.209 kb on - strand, within PP_2176 at 2482.209 kb on - strand, within PP_2176 at 2482.298 kb on + strand at 2482.298 kb on + strand at 2482.298 kb on + strand at 2482.299 kb on - strand at 2482.521 kb on + strand at 2482.592 kb on - strand at 2482.752 kb on - strand, within PP_2177 at 2482.758 kb on - strand, within PP_2177 at 2482.758 kb on - strand, within PP_2177 at 2482.758 kb on - strand, within PP_2177 at 2482.758 kb on - strand, within PP_2177 at 2482.821 kb on - strand, within PP_2177 at 2482.925 kb on + strand, within PP_2177 at 2482.926 kb on - strand, within PP_2177 at 2482.926 kb on - strand, within PP_2177 at 2483.058 kb on - strand at 2483.128 kb on + strand at 2483.129 kb on - strand at 2483.205 kb on - strand at 2483.243 kb on + strand at 2483.579 kb on + strand, within PP_2178 at 2483.579 kb on + strand, within PP_2178 at 2483.580 kb on - strand, within PP_2178 at 2483.580 kb on - strand, within PP_2178 at 2483.618 kb on + strand, within PP_2178 at 2483.619 kb on - strand, within PP_2178 at 2483.857 kb on + strand, within PP_2178 at 2483.903 kb on + strand, within PP_2178 at 2483.904 kb on - strand, within PP_2178 at 2483.904 kb on - strand, within PP_2178 at 2483.949 kb on - strand, within PP_2178 at 2483.965 kb on + strand, within PP_2178 at 2483.966 kb on - strand, within PP_2178 at 2484.072 kb on - strand, within PP_2178
Per-strain Table
Position Strand Gene LocusTag Fraction Cadaverine (N) remove 2,481,628 + PP_2176 0.20 +0.4 2,481,628 + PP_2176 0.20 -0.3 2,481,628 + PP_2176 0.20 -0.1 2,481,897 + PP_2176 0.48 -0.2 2,481,957 - PP_2176 0.55 -0.8 2,481,962 + PP_2176 0.55 +0.5 2,481,962 + PP_2176 0.55 +0.8 2,482,209 - PP_2176 0.82 -0.3 2,482,209 - PP_2176 0.82 +0.7 2,482,298 + +0.5 2,482,298 + +0.5 2,482,298 + +0.1 2,482,299 - +0.6 2,482,521 + -1.4 2,482,592 - -1.1 2,482,752 - PP_2177 0.36 +0.2 2,482,758 - PP_2177 0.37 -2.0 2,482,758 - PP_2177 0.37 -1.0 2,482,758 - PP_2177 0.37 -1.8 2,482,758 - PP_2177 0.37 -2.0 2,482,821 - PP_2177 0.48 -1.5 2,482,925 + PP_2177 0.67 -0.0 2,482,926 - PP_2177 0.67 -2.6 2,482,926 - PP_2177 0.67 -1.4 2,483,058 - -1.7 2,483,128 + -0.5 2,483,129 - -0.4 2,483,205 - -0.3 2,483,243 + -0.3 2,483,579 + PP_2178 0.33 +0.9 2,483,579 + PP_2178 0.33 -0.4 2,483,580 - PP_2178 0.33 -0.5 2,483,580 - PP_2178 0.33 -0.5 2,483,618 + PP_2178 0.36 -0.2 2,483,619 - PP_2178 0.36 -1.2 2,483,857 + PP_2178 0.54 -0.2 2,483,903 + PP_2178 0.57 +0.0 2,483,904 - PP_2178 0.57 -1.0 2,483,904 - PP_2178 0.57 -0.5 2,483,949 - PP_2178 0.60 +0.1 2,483,965 + PP_2178 0.62 -0.0 2,483,966 - PP_2178 0.62 +1.3 2,484,072 - PP_2178 0.70 +0.7
Or see this region's nucleotide sequence