Strain Fitness in Pseudomonas putida KT2440 around PP_2177

Experiment: Cadaverine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2176 and PP_2177 are separated by 177 nucleotidesPP_2177 and PP_2178 are separated by 27 nucleotides PP_2176: PP_2176 - transcriptional regulator, LysR family, at 2,481,446 to 2,482,375 _2176 PP_2177: PP_2177 - putative transcriptional regulator, at 2,482,553 to 2,483,107 _2177 PP_2178: PP_2178 - glutamate-putrescine ligase, at 2,483,135 to 2,484,481 _2178 Position (kb) 2482 2483 2484Strain fitness (log2 ratio) -2 -1 0 1at 2481.628 kb on + strand, within PP_2176at 2481.628 kb on + strand, within PP_2176at 2481.628 kb on + strand, within PP_2176at 2481.897 kb on + strand, within PP_2176at 2481.957 kb on - strand, within PP_2176at 2481.962 kb on + strand, within PP_2176at 2481.962 kb on + strand, within PP_2176at 2482.209 kb on - strand, within PP_2176at 2482.209 kb on - strand, within PP_2176at 2482.298 kb on + strandat 2482.298 kb on + strandat 2482.298 kb on + strandat 2482.299 kb on - strandat 2482.521 kb on + strandat 2482.592 kb on - strandat 2482.752 kb on - strand, within PP_2177at 2482.758 kb on - strand, within PP_2177at 2482.758 kb on - strand, within PP_2177at 2482.758 kb on - strand, within PP_2177at 2482.758 kb on - strand, within PP_2177at 2482.821 kb on - strand, within PP_2177at 2482.925 kb on + strand, within PP_2177at 2482.926 kb on - strand, within PP_2177at 2482.926 kb on - strand, within PP_2177at 2483.058 kb on - strandat 2483.128 kb on + strandat 2483.129 kb on - strandat 2483.205 kb on - strandat 2483.243 kb on + strandat 2483.579 kb on + strand, within PP_2178at 2483.579 kb on + strand, within PP_2178at 2483.580 kb on - strand, within PP_2178at 2483.580 kb on - strand, within PP_2178at 2483.618 kb on + strand, within PP_2178at 2483.619 kb on - strand, within PP_2178at 2483.857 kb on + strand, within PP_2178at 2483.903 kb on + strand, within PP_2178at 2483.904 kb on - strand, within PP_2178at 2483.904 kb on - strand, within PP_2178at 2483.949 kb on - strand, within PP_2178at 2483.965 kb on + strand, within PP_2178at 2483.966 kb on - strand, within PP_2178at 2484.072 kb on - strand, within PP_2178

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Per-strain Table

Position Strand Gene LocusTag Fraction Cadaverine (N)
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2,481,628 + PP_2176 0.20 +0.4
2,481,628 + PP_2176 0.20 -0.3
2,481,628 + PP_2176 0.20 -0.1
2,481,897 + PP_2176 0.48 -0.2
2,481,957 - PP_2176 0.55 -0.8
2,481,962 + PP_2176 0.55 +0.5
2,481,962 + PP_2176 0.55 +0.8
2,482,209 - PP_2176 0.82 -0.3
2,482,209 - PP_2176 0.82 +0.7
2,482,298 + +0.5
2,482,298 + +0.5
2,482,298 + +0.1
2,482,299 - +0.6
2,482,521 + -1.4
2,482,592 - -1.1
2,482,752 - PP_2177 0.36 +0.2
2,482,758 - PP_2177 0.37 -2.0
2,482,758 - PP_2177 0.37 -1.0
2,482,758 - PP_2177 0.37 -1.8
2,482,758 - PP_2177 0.37 -2.0
2,482,821 - PP_2177 0.48 -1.5
2,482,925 + PP_2177 0.67 -0.0
2,482,926 - PP_2177 0.67 -2.6
2,482,926 - PP_2177 0.67 -1.4
2,483,058 - -1.7
2,483,128 + -0.5
2,483,129 - -0.4
2,483,205 - -0.3
2,483,243 + -0.3
2,483,579 + PP_2178 0.33 +0.9
2,483,579 + PP_2178 0.33 -0.4
2,483,580 - PP_2178 0.33 -0.5
2,483,580 - PP_2178 0.33 -0.5
2,483,618 + PP_2178 0.36 -0.2
2,483,619 - PP_2178 0.36 -1.2
2,483,857 + PP_2178 0.54 -0.2
2,483,903 + PP_2178 0.57 +0.0
2,483,904 - PP_2178 0.57 -1.0
2,483,904 - PP_2178 0.57 -0.5
2,483,949 - PP_2178 0.60 +0.1
2,483,965 + PP_2178 0.62 -0.0
2,483,966 - PP_2178 0.62 +1.3
2,484,072 - PP_2178 0.70 +0.7

Or see this region's nucleotide sequence