Experiment: Nicotinic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5220 and PP_5221 are separated by 203 nucleotides PP_5221 and PP_5222 are separated by 130 nucleotides PP_5222 and PP_5223 are separated by 69 nucleotides PP_5223 and PP_5224 are separated by 146 nucleotides PP_5224 and PP_5225 are separated by 1 nucleotides
PP_5220: PP_5220 - putative hydrolase, at 5,955,109 to 5,955,774
_5220
PP_5221: PP_5221 - conserved protein of unknown function, UPF0178 family, at 5,955,978 to 5,956,466
_5221
PP_5222: PP_5222 - adenylate cyclase, at 5,956,597 to 5,959,452
_5222
PP_5223: PP_5223 - regulator of nucleotide diphosphokinase, at 5,959,522 to 5,959,932
_5223
PP_5224: PP_5224 - conserved protein of unknown function, at 5,960,079 to 5,960,303
_5224
PP_5225: PP_5225 - frataxin, at 5,960,305 to 5,960,637
_5225
Position (kb) 5956
5957
5958
5959
5960 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5955.642 kb on - strand, within PP_5220 at 5955.642 kb on - strand, within PP_5220 at 5955.642 kb on - strand, within PP_5220 at 5955.691 kb on + strand, within PP_5220 at 5955.691 kb on + strand, within PP_5220 at 5955.692 kb on - strand, within PP_5220 at 5955.733 kb on + strand at 5955.733 kb on + strand at 5955.772 kb on + strand at 5955.772 kb on + strand at 5955.777 kb on + strand at 5955.778 kb on - strand at 5955.778 kb on - strand at 5955.778 kb on - strand at 5955.778 kb on - strand at 5955.898 kb on - strand at 5956.048 kb on + strand, within PP_5221 at 5956.252 kb on + strand, within PP_5221 at 5956.252 kb on + strand, within PP_5221 at 5956.253 kb on - strand, within PP_5221 at 5956.422 kb on + strand at 5956.422 kb on + strand at 5956.423 kb on - strand at 5956.423 kb on - strand at 5956.423 kb on - strand at 5956.442 kb on + strand at 5956.442 kb on + strand at 5956.442 kb on + strand at 5956.442 kb on + strand at 5956.443 kb on - strand at 5956.443 kb on - strand at 5956.443 kb on - strand at 5956.529 kb on + strand at 5956.529 kb on + strand at 5956.529 kb on + strand at 5956.742 kb on + strand at 5956.742 kb on + strand at 5956.742 kb on + strand at 5956.742 kb on + strand at 5956.742 kb on + strand at 5956.743 kb on - strand at 5956.795 kb on + strand at 5956.824 kb on - strand at 5956.832 kb on - strand at 5956.888 kb on + strand, within PP_5222 at 5956.888 kb on + strand, within PP_5222 at 5956.888 kb on + strand, within PP_5222 at 5956.889 kb on - strand, within PP_5222 at 5956.889 kb on - strand, within PP_5222 at 5956.889 kb on - strand, within PP_5222 at 5956.889 kb on - strand, within PP_5222 at 5956.889 kb on - strand, within PP_5222 at 5957.179 kb on + strand, within PP_5222 at 5957.250 kb on - strand at 5957.257 kb on + strand, within PP_5222 at 5957.258 kb on - strand, within PP_5222 at 5957.273 kb on - strand, within PP_5222 at 5957.273 kb on - strand, within PP_5222 at 5957.273 kb on - strand, within PP_5222 at 5957.275 kb on + strand, within PP_5222 at 5957.275 kb on + strand, within PP_5222 at 5957.275 kb on + strand, within PP_5222 at 5957.276 kb on - strand, within PP_5222 at 5957.276 kb on - strand, within PP_5222 at 5957.276 kb on - strand, within PP_5222 at 5957.281 kb on + strand, within PP_5222 at 5957.281 kb on + strand, within PP_5222 at 5957.281 kb on + strand, within PP_5222 at 5957.281 kb on + strand, within PP_5222 at 5957.281 kb on + strand, within PP_5222 at 5957.282 kb on - strand, within PP_5222 at 5957.282 kb on - strand, within PP_5222 at 5957.282 kb on - strand, within PP_5222 at 5957.452 kb on + strand, within PP_5222 at 5957.453 kb on - strand, within PP_5222 at 5957.494 kb on + strand, within PP_5222 at 5957.495 kb on - strand, within PP_5222 at 5957.495 kb on - strand, within PP_5222 at 5957.545 kb on + strand, within PP_5222 at 5957.546 kb on - strand, within PP_5222 at 5957.546 kb on - strand, within PP_5222 at 5957.546 kb on - strand, within PP_5222 at 5957.575 kb on + strand, within PP_5222 at 5957.575 kb on + strand, within PP_5222 at 5957.575 kb on + strand, within PP_5222 at 5957.615 kb on + strand, within PP_5222 at 5957.616 kb on - strand, within PP_5222 at 5957.616 kb on - strand, within PP_5222 at 5957.616 kb on - strand, within PP_5222 at 5957.630 kb on - strand, within PP_5222 at 5957.812 kb on - strand, within PP_5222 at 5957.822 kb on - strand, within PP_5222 at 5957.909 kb on - strand, within PP_5222 at 5958.029 kb on - strand, within PP_5222 at 5958.029 kb on - strand, within PP_5222 at 5958.029 kb on - strand, within PP_5222 at 5958.072 kb on - strand, within PP_5222 at 5958.072 kb on - strand, within PP_5222 at 5958.108 kb on - strand, within PP_5222 at 5958.237 kb on + strand, within PP_5222 at 5958.238 kb on - strand, within PP_5222 at 5958.238 kb on - strand, within PP_5222 at 5958.394 kb on + strand, within PP_5222 at 5958.394 kb on + strand, within PP_5222 at 5958.394 kb on + strand, within PP_5222 at 5958.395 kb on - strand, within PP_5222 at 5958.395 kb on - strand, within PP_5222 at 5958.475 kb on + strand, within PP_5222 at 5958.476 kb on - strand, within PP_5222 at 5958.476 kb on - strand, within PP_5222 at 5958.476 kb on - strand, within PP_5222 at 5958.560 kb on + strand, within PP_5222 at 5958.605 kb on + strand, within PP_5222 at 5958.661 kb on + strand, within PP_5222 at 5958.661 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.668 kb on + strand, within PP_5222 at 5958.669 kb on - strand, within PP_5222 at 5958.758 kb on - strand, within PP_5222 at 5958.781 kb on + strand, within PP_5222 at 5958.793 kb on + strand, within PP_5222 at 5958.793 kb on + strand, within PP_5222 at 5958.861 kb on + strand, within PP_5222 at 5958.861 kb on + strand, within PP_5222 at 5958.875 kb on - strand at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.904 kb on + strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.905 kb on - strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.919 kb on + strand, within PP_5222 at 5958.920 kb on - strand, within PP_5222 at 5958.920 kb on - strand, within PP_5222 at 5958.920 kb on - strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.150 kb on + strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.151 kb on - strand, within PP_5222 at 5959.153 kb on + strand, within PP_5222 at 5959.153 kb on + strand, within PP_5222 at 5959.153 kb on + strand, within PP_5222 at 5959.153 kb on + strand, within PP_5222 at 5959.154 kb on - strand, within PP_5222 at 5959.154 kb on - strand, within PP_5222 at 5959.154 kb on - strand, within PP_5222 at 5959.210 kb on + strand at 5959.210 kb on + strand at 5959.258 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.318 kb on + strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.319 kb on - strand at 5959.320 kb on + strand at 5959.321 kb on - strand at 5959.379 kb on - strand at 5959.379 kb on - strand at 5959.387 kb on + strand at 5959.387 kb on + strand at 5959.388 kb on - strand at 5959.388 kb on - strand at 5959.523 kb on + strand at 5959.523 kb on + strand at 5959.523 kb on + strand at 5959.524 kb on - strand at 5959.532 kb on + strand at 5959.533 kb on - strand at 5959.556 kb on + strand at 5959.556 kb on + strand at 5959.557 kb on - strand at 5959.557 kb on - strand at 5959.718 kb on + strand, within PP_5223 at 5959.718 kb on + strand, within PP_5223 at 5959.719 kb on - strand, within PP_5223 at 5959.851 kb on + strand, within PP_5223 at 5959.891 kb on + strand, within PP_5223 at 5959.891 kb on + strand, within PP_5223 at 5959.891 kb on + strand, within PP_5223 at 5959.891 kb on + strand, within PP_5223 at 5959.892 kb on - strand at 5959.892 kb on - strand at 5959.892 kb on - strand at 5960.045 kb on + strand at 5960.045 kb on + strand at 5960.046 kb on - strand at 5960.062 kb on + strand at 5960.223 kb on + strand, within PP_5224 at 5960.224 kb on - strand, within PP_5224 at 5960.224 kb on - strand, within PP_5224 at 5960.224 kb on - strand, within PP_5224 at 5960.266 kb on + strand, within PP_5224 at 5960.267 kb on - strand, within PP_5224 at 5960.298 kb on - strand at 5960.353 kb on - strand, within PP_5225
Per-strain Table
Position Strand Gene LocusTag Fraction Nicotinic Acid (N) remove 5,955,642 - PP_5220 0.80 -0.2 5,955,642 - PP_5220 0.80 -0.9 5,955,642 - PP_5220 0.80 -0.5 5,955,691 + PP_5220 0.87 -0.2 5,955,691 + PP_5220 0.87 +1.7 5,955,692 - PP_5220 0.88 -0.4 5,955,733 + -0.4 5,955,733 + -0.4 5,955,772 + -1.7 5,955,772 + -0.2 5,955,777 + +1.1 5,955,778 - -0.1 5,955,778 - +1.2 5,955,778 - +0.2 5,955,778 - -0.7 5,955,898 - -0.2 5,956,048 + PP_5221 0.14 -1.2 5,956,252 + PP_5221 0.56 +0.9 5,956,252 + PP_5221 0.56 -0.0 5,956,253 - PP_5221 0.56 +0.4 5,956,422 + -1.1 5,956,422 + -0.2 5,956,423 - -0.3 5,956,423 - -0.2 5,956,423 - -0.9 5,956,442 + -0.4 5,956,442 + +2.1 5,956,442 + -0.1 5,956,442 + -0.2 5,956,443 - +0.7 5,956,443 - +0.1 5,956,443 - -0.0 5,956,529 + +0.1 5,956,529 + +0.2 5,956,529 + +0.5 5,956,742 + +0.6 5,956,742 + +0.0 5,956,742 + -0.2 5,956,742 + -1.0 5,956,742 + -0.1 5,956,743 - +0.1 5,956,795 + -0.3 5,956,824 - -0.1 5,956,832 - +1.4 5,956,888 + PP_5222 0.10 +0.5 5,956,888 + PP_5222 0.10 -0.2 5,956,888 + PP_5222 0.10 -0.4 5,956,889 - PP_5222 0.10 +1.0 5,956,889 - PP_5222 0.10 -0.2 5,956,889 - PP_5222 0.10 -0.3 5,956,889 - PP_5222 0.10 -0.3 5,956,889 - PP_5222 0.10 +0.5 5,957,179 + PP_5222 0.20 -0.4 5,957,250 - +3.1 5,957,257 + PP_5222 0.23 -0.3 5,957,258 - PP_5222 0.23 -0.5 5,957,273 - PP_5222 0.24 -0.1 5,957,273 - PP_5222 0.24 +0.5 5,957,273 - PP_5222 0.24 +0.2 5,957,275 + PP_5222 0.24 +0.2 5,957,275 + PP_5222 0.24 -1.1 5,957,275 + PP_5222 0.24 +0.4 5,957,276 - PP_5222 0.24 +0.1 5,957,276 - PP_5222 0.24 -0.6 5,957,276 - PP_5222 0.24 +0.3 5,957,281 + PP_5222 0.24 -1.3 5,957,281 + PP_5222 0.24 -0.3 5,957,281 + PP_5222 0.24 -0.5 5,957,281 + PP_5222 0.24 +1.1 5,957,281 + PP_5222 0.24 +0.0 5,957,282 - PP_5222 0.24 +0.4 5,957,282 - PP_5222 0.24 +0.1 5,957,282 - PP_5222 0.24 +0.1 5,957,452 + PP_5222 0.30 -0.7 5,957,453 - PP_5222 0.30 +0.2 5,957,494 + PP_5222 0.31 +0.2 5,957,495 - PP_5222 0.31 -0.5 5,957,495 - PP_5222 0.31 +0.6 5,957,545 + PP_5222 0.33 -0.3 5,957,546 - PP_5222 0.33 -0.5 5,957,546 - PP_5222 0.33 -1.0 5,957,546 - PP_5222 0.33 -0.2 5,957,575 + PP_5222 0.34 -0.3 5,957,575 + PP_5222 0.34 -0.9 5,957,575 + PP_5222 0.34 -0.1 5,957,615 + PP_5222 0.36 -0.2 5,957,616 - PP_5222 0.36 -0.0 5,957,616 - PP_5222 0.36 -0.0 5,957,616 - PP_5222 0.36 -0.0 5,957,630 - PP_5222 0.36 -0.5 5,957,812 - PP_5222 0.43 +1.3 5,957,822 - PP_5222 0.43 -0.4 5,957,909 - PP_5222 0.46 +0.1 5,958,029 - PP_5222 0.50 +0.1 5,958,029 - PP_5222 0.50 -1.1 5,958,029 - PP_5222 0.50 +0.3 5,958,072 - PP_5222 0.52 +1.0 5,958,072 - PP_5222 0.52 +0.4 5,958,108 - PP_5222 0.53 +0.2 5,958,237 + PP_5222 0.57 +0.2 5,958,238 - PP_5222 0.57 -0.3 5,958,238 - PP_5222 0.57 +1.0 5,958,394 + PP_5222 0.63 -0.6 5,958,394 + PP_5222 0.63 +0.6 5,958,394 + PP_5222 0.63 -0.2 5,958,395 - PP_5222 0.63 +0.4 5,958,395 - PP_5222 0.63 +0.1 5,958,475 + PP_5222 0.66 +1.1 5,958,476 - PP_5222 0.66 +0.7 5,958,476 - PP_5222 0.66 +0.6 5,958,476 - PP_5222 0.66 -0.5 5,958,560 + PP_5222 0.69 -0.6 5,958,605 + PP_5222 0.70 -0.2 5,958,661 + PP_5222 0.72 -0.0 5,958,661 + PP_5222 0.72 +0.6 5,958,668 + PP_5222 0.73 +0.2 5,958,668 + PP_5222 0.73 -0.2 5,958,668 + PP_5222 0.73 -0.6 5,958,668 + PP_5222 0.73 -0.4 5,958,668 + PP_5222 0.73 +0.2 5,958,669 - PP_5222 0.73 +0.3 5,958,758 - PP_5222 0.76 +1.5 5,958,781 + PP_5222 0.76 +0.7 5,958,793 + PP_5222 0.77 -0.5 5,958,793 + PP_5222 0.77 -0.3 5,958,861 + PP_5222 0.79 -0.3 5,958,861 + PP_5222 0.79 +0.1 5,958,875 - +0.2 5,958,904 + PP_5222 0.81 +0.7 5,958,904 + PP_5222 0.81 -0.5 5,958,904 + PP_5222 0.81 +0.4 5,958,904 + PP_5222 0.81 -0.5 5,958,904 + PP_5222 0.81 -1.6 5,958,904 + PP_5222 0.81 +1.1 5,958,904 + PP_5222 0.81 -0.5 5,958,904 + PP_5222 0.81 +0.1 5,958,905 - PP_5222 0.81 +0.1 5,958,905 - PP_5222 0.81 -2.1 5,958,905 - PP_5222 0.81 +0.4 5,958,905 - PP_5222 0.81 -0.1 5,958,905 - PP_5222 0.81 +0.8 5,958,905 - PP_5222 0.81 -0.4 5,958,905 - PP_5222 0.81 -0.1 5,958,919 + PP_5222 0.81 -0.3 5,958,919 + PP_5222 0.81 -0.2 5,958,919 + PP_5222 0.81 +0.5 5,958,919 + PP_5222 0.81 -0.1 5,958,919 + PP_5222 0.81 +0.5 5,958,920 - PP_5222 0.81 -0.2 5,958,920 - PP_5222 0.81 +0.2 5,958,920 - PP_5222 0.81 +0.0 5,959,150 + PP_5222 0.89 -0.6 5,959,150 + PP_5222 0.89 -0.3 5,959,150 + PP_5222 0.89 +0.3 5,959,150 + PP_5222 0.89 +0.3 5,959,150 + PP_5222 0.89 -1.2 5,959,150 + PP_5222 0.89 +0.3 5,959,151 - PP_5222 0.89 -0.2 5,959,151 - PP_5222 0.89 -0.7 5,959,151 - PP_5222 0.89 +0.1 5,959,151 - PP_5222 0.89 -0.5 5,959,151 - PP_5222 0.89 +0.3 5,959,153 + PP_5222 0.89 -0.3 5,959,153 + PP_5222 0.89 +0.1 5,959,153 + PP_5222 0.89 +1.2 5,959,153 + PP_5222 0.89 +0.2 5,959,154 - PP_5222 0.90 -0.1 5,959,154 - PP_5222 0.90 +0.6 5,959,154 - PP_5222 0.90 +0.5 5,959,210 + +0.2 5,959,210 + -0.5 5,959,258 + +1.0 5,959,318 + +0.1 5,959,318 + +0.7 5,959,318 + +0.3 5,959,318 + -0.4 5,959,318 + +0.7 5,959,318 + +0.3 5,959,318 + -0.1 5,959,318 + -0.2 5,959,319 - +0.1 5,959,319 - +0.7 5,959,319 - -0.6 5,959,319 - -0.7 5,959,319 - +0.0 5,959,319 - +0.3 5,959,319 - -0.2 5,959,320 + +0.2 5,959,321 - +1.0 5,959,379 - +0.6 5,959,379 - -0.2 5,959,387 + -1.1 5,959,387 + +0.1 5,959,388 - -0.5 5,959,388 - -0.1 5,959,523 + -0.4 5,959,523 + +1.3 5,959,523 + +0.8 5,959,524 - -0.5 5,959,532 + -0.5 5,959,533 - +0.3 5,959,556 + -0.2 5,959,556 + +0.1 5,959,557 - +0.6 5,959,557 - -0.1 5,959,718 + PP_5223 0.48 +0.8 5,959,718 + PP_5223 0.48 +0.6 5,959,719 - PP_5223 0.48 -0.3 5,959,851 + PP_5223 0.80 -0.1 5,959,891 + PP_5223 0.90 -0.3 5,959,891 + PP_5223 0.90 +0.4 5,959,891 + PP_5223 0.90 +0.2 5,959,891 + PP_5223 0.90 +0.1 5,959,892 - +0.0 5,959,892 - -0.1 5,959,892 - +0.5 5,960,045 + +0.1 5,960,045 + +0.3 5,960,046 - -0.4 5,960,062 + -0.3 5,960,223 + PP_5224 0.64 -0.1 5,960,224 - PP_5224 0.64 +1.2 5,960,224 - PP_5224 0.64 -0.8 5,960,224 - PP_5224 0.64 -0.2 5,960,266 + PP_5224 0.83 -0.2 5,960,267 - PP_5224 0.84 +0.3 5,960,298 - +0.3 5,960,353 - PP_5225 0.14 -0.2
Or see this region's nucleotide sequence