Experiment: Imidazole (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5447 and PP_0629 are separated by 86 nucleotides PP_0629 and PP_0630 are separated by 111 nucleotides PP_0630 and PP_0631 overlap by 4 nucleotides PP_0631 and PP_0632 overlap by 1 nucleotides
PP_5447: PP_5447 - conserved membrane protein of unknown function, at 736,392 to 736,823
_5447
PP_0629: PP_0629 - conserved membrane protein of unknown function, at 736,910 to 737,617
_0629
PP_0630: PP_0630 - DNA gyrase inhibitor YacG, at 737,729 to 737,929
_0630
PP_0631: PP_0631 - Dephospho-CoA kinase, at 737,926 to 738,549
_0631
PP_0632: PP_0632 - leader peptidase/N-methyltransferase, at 738,549 to 739,415
_0632
Position (kb) 737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 736.761 kb on + strand, within PP_5447 at 736.761 kb on + strand, within PP_5447 at 736.794 kb on + strand at 736.892 kb on - strand at 736.892 kb on - strand at 736.903 kb on + strand at 736.903 kb on + strand at 736.925 kb on - strand at 736.925 kb on - strand at 736.988 kb on + strand, within PP_0629 at 736.989 kb on - strand, within PP_0629 at 737.135 kb on + strand, within PP_0629 at 737.144 kb on - strand, within PP_0629 at 737.297 kb on - strand, within PP_0629 at 737.314 kb on - strand, within PP_0629 at 737.314 kb on - strand, within PP_0629 at 737.354 kb on - strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.582 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.757 kb on + strand, within PP_0630 at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.581 kb on - strand at 738.583 kb on - strand at 738.583 kb on - strand at 738.628 kb on + strand at 738.628 kb on + strand at 738.628 kb on + strand at 738.829 kb on + strand, within PP_0632 at 738.829 kb on + strand, within PP_0632
Per-strain Table
Position Strand Gene LocusTag Fraction Imidazole (N) remove 736,761 + PP_5447 0.85 +0.7 736,761 + PP_5447 0.85 +1.3 736,794 + -0.1 736,892 - +0.4 736,892 - +0.6 736,903 + +1.6 736,903 + +1.7 736,925 - +0.3 736,925 - +0.2 736,988 + PP_0629 0.11 -1.2 736,989 - PP_0629 0.11 -0.8 737,135 + PP_0629 0.32 -0.5 737,144 - PP_0629 0.33 +0.4 737,297 - PP_0629 0.55 -0.6 737,314 - PP_0629 0.57 -1.0 737,314 - PP_0629 0.57 -1.8 737,354 - PP_0629 0.63 -0.6 737,526 + PP_0629 0.87 -1.0 737,526 + PP_0629 0.87 +0.1 737,526 + PP_0629 0.87 -0.1 737,582 + +0.1 737,714 + +1.0 737,714 + -0.1 737,714 + -3.0 737,714 + +1.1 737,715 - -0.4 737,715 - -0.5 737,715 - +0.2 737,757 + PP_0630 0.14 -2.5 738,572 - -0.6 738,572 - -1.2 738,572 - -0.4 738,572 - -0.3 738,581 - +0.3 738,583 - -0.4 738,583 - -0.8 738,628 + +0.1 738,628 + +0.6 738,628 + -0.0 738,829 + PP_0632 0.32 -2.8 738,829 + PP_0632 0.32 -0.1
Or see this region's nucleotide sequence