Strain Fitness in Pseudomonas putida KT2440 around PP_5130

Experiment: Betaine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5129 and PP_5130 are separated by 387 nucleotidesPP_5130 and PP_5131 are separated by 244 nucleotides PP_5129: PP_5129 - conserved protein of unknown function, at 5,851,205 to 5,852,293 _5129 PP_5130: PP_5130 - phosphoethanolamine/phosphocholine phosphatase, at 5,852,681 to 5,853,736 _5130 PP_5131: PP_5131 - sodium-cystine symporter, at 5,853,981 to 5,855,372 _5131 Position (kb) 5852 5853 5854Strain fitness (log2 ratio) -1 0 1 2at 5851.706 kb on + strand, within PP_5129at 5851.706 kb on + strand, within PP_5129at 5851.706 kb on + strand, within PP_5129at 5851.957 kb on + strand, within PP_5129at 5852.107 kb on + strand, within PP_5129at 5852.126 kb on - strand, within PP_5129at 5852.130 kb on - strand, within PP_5129at 5852.157 kb on + strand, within PP_5129at 5852.167 kb on - strand, within PP_5129at 5852.167 kb on - strand, within PP_5129at 5852.231 kb on - strandat 5852.240 kb on - strandat 5852.281 kb on + strandat 5852.281 kb on + strandat 5852.294 kb on + strandat 5852.295 kb on - strandat 5852.295 kb on - strandat 5852.295 kb on - strandat 5852.300 kb on + strandat 5852.318 kb on + strandat 5852.318 kb on + strandat 5852.319 kb on - strandat 5852.319 kb on - strandat 5852.319 kb on - strandat 5852.384 kb on + strandat 5852.385 kb on - strandat 5852.555 kb on + strandat 5852.555 kb on + strandat 5852.556 kb on - strandat 5852.556 kb on - strandat 5852.556 kb on - strandat 5852.626 kb on + strandat 5852.626 kb on + strandat 5852.626 kb on + strandat 5852.626 kb on + strandat 5852.627 kb on - strandat 5852.627 kb on - strandat 5852.675 kb on + strandat 5852.676 kb on - strandat 5852.796 kb on + strand, within PP_5130at 5852.796 kb on + strand, within PP_5130at 5852.797 kb on - strand, within PP_5130at 5852.814 kb on - strand, within PP_5130at 5852.865 kb on + strand, within PP_5130at 5852.865 kb on + strand, within PP_5130at 5852.865 kb on + strand, within PP_5130at 5852.925 kb on + strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.926 kb on - strand, within PP_5130at 5852.929 kb on + strand, within PP_5130at 5852.930 kb on - strand, within PP_5130at 5852.930 kb on - strand, within PP_5130at 5852.930 kb on - strand, within PP_5130at 5852.980 kb on - strand, within PP_5130at 5853.004 kb on + strand, within PP_5130at 5853.018 kb on + strand, within PP_5130at 5853.018 kb on + strand, within PP_5130at 5853.019 kb on - strand, within PP_5130at 5853.120 kb on + strand, within PP_5130at 5853.120 kb on + strand, within PP_5130at 5853.120 kb on + strand, within PP_5130at 5853.120 kb on + strand, within PP_5130at 5853.121 kb on - strand, within PP_5130at 5853.121 kb on - strand, within PP_5130at 5853.121 kb on - strand, within PP_5130at 5853.126 kb on + strand, within PP_5130at 5853.126 kb on + strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.127 kb on - strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.183 kb on + strand, within PP_5130at 5853.216 kb on + strand, within PP_5130at 5853.216 kb on + strand, within PP_5130at 5853.216 kb on + strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.217 kb on - strand, within PP_5130at 5853.286 kb on - strand, within PP_5130at 5853.288 kb on + strand, within PP_5130at 5853.288 kb on + strand, within PP_5130at 5853.288 kb on + strand, within PP_5130at 5853.288 kb on + strand, within PP_5130at 5853.289 kb on - strand, within PP_5130at 5853.289 kb on - strand, within PP_5130at 5853.356 kb on - strand, within PP_5130at 5853.356 kb on - strand, within PP_5130at 5853.388 kb on - strand, within PP_5130at 5853.420 kb on + strand, within PP_5130at 5853.421 kb on - strand, within PP_5130at 5853.421 kb on - strand, within PP_5130at 5853.421 kb on - strand, within PP_5130at 5853.423 kb on + strand, within PP_5130at 5853.423 kb on + strand, within PP_5130at 5853.424 kb on - strand, within PP_5130at 5853.424 kb on - strand, within PP_5130at 5853.424 kb on - strand, within PP_5130at 5853.424 kb on - strand, within PP_5130at 5853.424 kb on - strand, within PP_5130at 5853.426 kb on + strand, within PP_5130at 5853.426 kb on + strand, within PP_5130at 5853.506 kb on + strand, within PP_5130at 5853.555 kb on + strand, within PP_5130at 5853.561 kb on + strand, within PP_5130at 5853.591 kb on + strand, within PP_5130at 5853.591 kb on + strand, within PP_5130at 5853.591 kb on + strand, within PP_5130at 5853.595 kb on + strand, within PP_5130at 5853.596 kb on - strand, within PP_5130at 5853.596 kb on - strand, within PP_5130at 5853.596 kb on - strand, within PP_5130at 5853.739 kb on - strandat 5853.739 kb on - strandat 5853.739 kb on - strandat 5853.768 kb on + strandat 5853.769 kb on - strandat 5853.916 kb on - strandat 5854.078 kb on + strandat 5854.078 kb on + strandat 5854.079 kb on - strandat 5854.079 kb on - strandat 5854.079 kb on - strandat 5854.124 kb on + strand, within PP_5131at 5854.124 kb on + strand, within PP_5131at 5854.124 kb on + strand, within PP_5131at 5854.125 kb on - strand, within PP_5131at 5854.125 kb on - strand, within PP_5131at 5854.131 kb on + strand, within PP_5131at 5854.132 kb on - strand, within PP_5131at 5854.195 kb on - strand, within PP_5131at 5854.195 kb on - strand, within PP_5131at 5854.208 kb on - strand, within PP_5131at 5854.723 kb on + strand, within PP_5131at 5854.723 kb on + strand, within PP_5131at 5854.724 kb on - strand, within PP_5131

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Per-strain Table

Position Strand Gene LocusTag Fraction Betaine (N)
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5,851,706 + PP_5129 0.46 +0.0
5,851,706 + PP_5129 0.46 -0.1
5,851,706 + PP_5129 0.46 -0.3
5,851,957 + PP_5129 0.69 +0.0
5,852,107 + PP_5129 0.83 -0.2
5,852,126 - PP_5129 0.85 +0.3
5,852,130 - PP_5129 0.85 +0.8
5,852,157 + PP_5129 0.87 -0.1
5,852,167 - PP_5129 0.88 -0.5
5,852,167 - PP_5129 0.88 +0.2
5,852,231 - +0.7
5,852,240 - -0.8
5,852,281 + -0.2
5,852,281 + -0.4
5,852,294 + -0.2
5,852,295 - -0.8
5,852,295 - +0.2
5,852,295 - -0.4
5,852,300 + +0.2
5,852,318 + -1.1
5,852,318 + -0.3
5,852,319 - -0.2
5,852,319 - +0.9
5,852,319 - -1.2
5,852,384 + -0.6
5,852,385 - -0.4
5,852,555 + +0.9
5,852,555 + +0.1
5,852,556 - +0.2
5,852,556 - -0.3
5,852,556 - -0.3
5,852,626 + +0.2
5,852,626 + +0.7
5,852,626 + +0.7
5,852,626 + +0.1
5,852,627 - -0.6
5,852,627 - +1.3
5,852,675 + -0.8
5,852,676 - +0.4
5,852,796 + PP_5130 0.11 +0.7
5,852,796 + PP_5130 0.11 +0.2
5,852,797 - PP_5130 0.11 +0.6
5,852,814 - PP_5130 0.13 +1.3
5,852,865 + PP_5130 0.17 -0.5
5,852,865 + PP_5130 0.17 -0.3
5,852,865 + PP_5130 0.17 -1.0
5,852,925 + PP_5130 0.23 +0.2
5,852,926 - PP_5130 0.23 +0.1
5,852,926 - PP_5130 0.23 -0.3
5,852,926 - PP_5130 0.23 -1.0
5,852,926 - PP_5130 0.23 -0.4
5,852,926 - PP_5130 0.23 -0.5
5,852,926 - PP_5130 0.23 +0.1
5,852,926 - PP_5130 0.23 -0.2
5,852,929 + PP_5130 0.23 +0.2
5,852,930 - PP_5130 0.24 +0.4
5,852,930 - PP_5130 0.24 +0.2
5,852,930 - PP_5130 0.24 -0.2
5,852,980 - PP_5130 0.28 +0.2
5,853,004 + PP_5130 0.31 -0.2
5,853,018 + PP_5130 0.32 -0.5
5,853,018 + PP_5130 0.32 +0.2
5,853,019 - PP_5130 0.32 +0.8
5,853,120 + PP_5130 0.42 -0.1
5,853,120 + PP_5130 0.42 -0.0
5,853,120 + PP_5130 0.42 +0.3
5,853,120 + PP_5130 0.42 -0.0
5,853,121 - PP_5130 0.42 -0.2
5,853,121 - PP_5130 0.42 +0.5
5,853,121 - PP_5130 0.42 +0.3
5,853,126 + PP_5130 0.42 +1.2
5,853,126 + PP_5130 0.42 -0.3
5,853,127 - PP_5130 0.42 +0.9
5,853,127 - PP_5130 0.42 +0.6
5,853,127 - PP_5130 0.42 -0.3
5,853,127 - PP_5130 0.42 -0.1
5,853,127 - PP_5130 0.42 -0.1
5,853,127 - PP_5130 0.42 -0.1
5,853,127 - PP_5130 0.42 -0.8
5,853,183 + PP_5130 0.48 +0.3
5,853,183 + PP_5130 0.48 +0.7
5,853,183 + PP_5130 0.48 -1.0
5,853,183 + PP_5130 0.48 +0.4
5,853,183 + PP_5130 0.48 +0.1
5,853,216 + PP_5130 0.51 +0.2
5,853,216 + PP_5130 0.51 -0.8
5,853,216 + PP_5130 0.51 +0.3
5,853,217 - PP_5130 0.51 +0.9
5,853,217 - PP_5130 0.51 -0.4
5,853,217 - PP_5130 0.51 -0.7
5,853,217 - PP_5130 0.51 +1.0
5,853,217 - PP_5130 0.51 +0.5
5,853,286 - PP_5130 0.57 -0.8
5,853,288 + PP_5130 0.57 -0.2
5,853,288 + PP_5130 0.57 -0.1
5,853,288 + PP_5130 0.57 +0.2
5,853,288 + PP_5130 0.57 +0.1
5,853,289 - PP_5130 0.58 -0.4
5,853,289 - PP_5130 0.58 +0.3
5,853,356 - PP_5130 0.64 +0.1
5,853,356 - PP_5130 0.64 -0.5
5,853,388 - PP_5130 0.67 +0.3
5,853,420 + PP_5130 0.70 +1.5
5,853,421 - PP_5130 0.70 +0.5
5,853,421 - PP_5130 0.70 -0.2
5,853,421 - PP_5130 0.70 +0.0
5,853,423 + PP_5130 0.70 +2.5
5,853,423 + PP_5130 0.70 +0.9
5,853,424 - PP_5130 0.70 -0.1
5,853,424 - PP_5130 0.70 +0.5
5,853,424 - PP_5130 0.70 -0.1
5,853,424 - PP_5130 0.70 -0.3
5,853,424 - PP_5130 0.70 +0.7
5,853,426 + PP_5130 0.71 +0.2
5,853,426 + PP_5130 0.71 -0.5
5,853,506 + PP_5130 0.78 -0.8
5,853,555 + PP_5130 0.83 -0.5
5,853,561 + PP_5130 0.83 +0.4
5,853,591 + PP_5130 0.86 -1.5
5,853,591 + PP_5130 0.86 +1.5
5,853,591 + PP_5130 0.86 +0.0
5,853,595 + PP_5130 0.87 -0.3
5,853,596 - PP_5130 0.87 +0.1
5,853,596 - PP_5130 0.87 -0.1
5,853,596 - PP_5130 0.87 -0.7
5,853,739 - -0.4
5,853,739 - -0.4
5,853,739 - +0.3
5,853,768 + +0.2
5,853,769 - -0.1
5,853,916 - -0.2
5,854,078 + +0.4
5,854,078 + +0.2
5,854,079 - -0.3
5,854,079 - -0.1
5,854,079 - -0.0
5,854,124 + PP_5131 0.10 +0.0
5,854,124 + PP_5131 0.10 +0.1
5,854,124 + PP_5131 0.10 +0.3
5,854,125 - PP_5131 0.10 -0.4
5,854,125 - PP_5131 0.10 +0.3
5,854,131 + PP_5131 0.11 +0.1
5,854,132 - PP_5131 0.11 +0.3
5,854,195 - PP_5131 0.15 -0.4
5,854,195 - PP_5131 0.15 -0.1
5,854,208 - PP_5131 0.16 +0.1
5,854,723 + PP_5131 0.53 +0.4
5,854,723 + PP_5131 0.53 -0.3
5,854,724 - PP_5131 0.53 -0.5

Or see this region's nucleotide sequence