Strain Fitness in Pseudomonas putida KT2440 around PP_3775

Experiment: Carnitine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carnitine Hydrochloride (N)
4,302,166	+				-1.1
4,302,166	+				+0.1
4,302,167	-				-0.3
4,302,167	-				-0.3
4,302,257	+				-0.1
4,302,269	+				-0.1
4,302,270	-				+0.5
4,302,270	-				-0.3
4,302,270	-				+0.5
4,302,342	-				+0.4
4,302,411	+				+0.1
4,302,412	-				+0.4
4,302,412	-				+0.4
4,302,412	-				+1.6
4,302,705	+				+0.4
4,302,706	-				+0.2
4,302,803	+				-0.2
4,302,803	+				-0.3
4,302,807	+				-0.2
4,302,814	+				-0.3
4,302,922	+		PP_5627	0.54	-1.3
4,302,922	+		PP_5627	0.54	+0.0
4,302,923	-		PP_5627	0.55	-1.2
4,302,923	-		PP_5627	0.55	-0.6
4,302,923	-		PP_5627	0.55	-0.6
4,302,923	-		PP_5627	0.55	+0.2
4,302,923	-		PP_5627	0.55	+0.3
4,302,923	-		PP_5627	0.55	-0.2
4,302,923	-		PP_5627	0.55	-0.3
4,302,923	-		PP_5627	0.55	-0.3
4,302,966	+		PP_5627	0.75	+1.1
4,302,966	+		PP_5627	0.75	+0.9
4,302,967	-		PP_5627	0.76	+1.3
4,302,967	-		PP_5627	0.76	+0.7
4,302,967	-		PP_5627	0.76	-0.3
4,302,967	-		PP_5627	0.76	-0.6
4,302,967	-		PP_5627	0.76	-1.6
4,302,967	-		PP_5627	0.76	+0.1
4,302,980	+		PP_5627	0.82	+0.7
4,303,023	+				-0.6
4,303,023	+				-0.1
4,303,024	-				-0.2
4,303,024	-				+0.0
4,303,027	+				+0.1
4,303,027	+				+0.5
4,303,027	+				+0.0
4,303,027	+				+0.7
4,303,028	-				-0.4
4,303,028	-				-0.9
4,303,028	-				-0.0
4,303,028	-				-0.1
4,303,028	-				-0.0
4,303,037	+				+0.1
4,303,052	+				+1.0
4,303,061	+				+0.6
4,303,061	+				-0.3
4,303,062	-				-0.6
4,303,062	-				-0.3
4,303,084	+				-0.4
4,303,084	+				-0.3
4,303,085	-				+0.2
4,303,100	+				-0.8
4,303,101	-				+0.6
4,303,101	-				+0.0
4,303,101	-				+0.7
4,303,103	+				-0.1
4,303,103	+				-0.3
4,303,104	-				-0.3
4,303,134	+				+0.4
4,303,134	+				-0.2
4,303,134	+				-0.8
4,303,134	+				-0.2
4,303,135	-				-0.2
4,303,155	+				-1.5
4,303,193	+				+0.4
4,303,193	+				+0.3
4,303,194	-				+0.1
4,303,194	-				+0.5
4,303,234	+				+0.1
4,303,234	+				-0.8
4,303,234	+				+0.4
4,303,234	+				-0.1
4,303,235	-				+0.1
4,303,235	-				-0.2
4,303,235	-				-0.2
4,303,284	+		PP_3775	0.11	-0.9
4,303,284	+		PP_3775	0.11	-0.0
4,303,285	-		PP_3775	0.11	-0.2
4,303,285	-		PP_3775	0.11	+0.8
4,303,285	-		PP_3775	0.11	-0.9
4,303,285	-		PP_3775	0.11	+0.1
4,303,285	-		PP_3775	0.11	-0.0
4,303,289	+		PP_3775	0.12	+0.3
4,303,289	+		PP_3775	0.12	+0.5
4,303,290	-		PP_3775	0.12	-0.5
4,303,290	-		PP_3775	0.12	+0.1
4,303,347	+		PP_3775	0.17	+0.3
4,303,347	+		PP_3775	0.17	+0.6
4,303,348	-		PP_3775	0.17	-0.2
4,303,348	-		PP_3775	0.17	+0.1
4,303,348	-		PP_3775	0.17	+0.8
4,303,348	-		PP_3775	0.17	-0.2
4,303,348	-		PP_3775	0.17	-0.1
4,303,348	-		PP_3775	0.17	+0.4
4,303,348	-		PP_3775	0.17	-2.5
4,303,349	+		PP_3775	0.17	+0.8
4,303,349	+		PP_3775	0.17	-1.2
4,303,349	+		PP_3775	0.17	+0.6
4,303,349	+		PP_3775	0.17	+0.5
4,303,350	-		PP_3775	0.17	-0.6
4,303,350	-		PP_3775	0.17	-0.1
4,303,350	-		PP_3775	0.17	+0.5
4,303,350	-		PP_3775	0.17	+0.1
4,303,350	-		PP_3775	0.17	+0.4
4,303,404	-		PP_3775	0.22	+0.2
4,303,404	-		PP_3775	0.22	-0.3
4,303,416	-		PP_3775	0.23	+0.3
4,303,520	-		PP_3775	0.32	-0.2
4,303,539	+		PP_3775	0.34	-0.8
4,303,539	+		PP_3775	0.34	+0.1
4,303,539	+		PP_3775	0.34	-0.1
4,303,540	-		PP_3775	0.34	+0.0
4,303,540	-		PP_3775	0.34	-0.4
4,303,540	-		PP_3775	0.34	+0.5
4,303,540	-		PP_3775	0.34	-0.3
4,303,566	+		PP_3775	0.36	-0.8
4,303,671	-				+3.2
4,303,748	+		PP_3775	0.52	-0.3
4,303,748	+		PP_3775	0.52	+0.2
4,303,749	-		PP_3775	0.52	+0.6
4,303,886	+		PP_3775	0.64	+0.0
4,303,886	+		PP_3775	0.64	+0.3
4,303,966	+		PP_3775	0.71	+1.3
4,304,044	-		PP_3775	0.77	-0.1
4,304,044	-		PP_3775	0.77	+0.1
4,304,065	+		PP_3775	0.79	+0.3
4,304,066	-		PP_3775	0.79	-0.0
4,304,114	+		PP_3775	0.84	+0.5
4,304,115	-		PP_3775	0.84	+0.2
4,304,115	-		PP_3775	0.84	+0.6
4,304,115	-		PP_3775	0.84	+0.5
4,304,115	-		PP_3775	0.84	-0.3
4,304,115	-		PP_3775	0.84	-0.2
4,304,118	+		PP_3775	0.84	+0.6
4,304,166	+		PP_3775	0.88	-0.4
4,304,166	+		PP_3775	0.88	-0.3
4,304,167	-		PP_3775	0.88	-0.7
4,304,167	-		PP_3775	0.88	+0.2
4,304,289	+				+0.3
4,304,296	+				-0.4
4,304,296	+				-0.7
4,304,296	+				-0.3
4,304,296	+				+0.5
4,304,296	+				+0.3
4,304,296	+				-0.7
4,304,296	+				-0.1
4,304,296	+				-0.5
4,304,296	+				-1.0
4,304,296	+				-0.1
4,304,296	+				+0.5
4,304,296	+				+0.1
4,304,296	+				-0.3
4,304,297	-				+0.0
4,304,297	-				+0.2
4,304,297	-				-1.2
4,304,297	-				-0.6
4,304,297	-				-0.1
4,304,297	-				-0.9
4,304,297	-				+0.2
4,304,297	-				-0.9
4,304,336	+				-0.7
4,304,337	-				+0.0
4,304,355	+				-0.1
4,304,355	+				+0.3
4,304,415	+		PP_3776	0.13	-0.5
4,304,415	+		PP_3776	0.13	-0.1
4,304,416	-		PP_3776	0.13	-0.7
4,304,416	-		PP_3776	0.13	-0.0
4,304,425	+		PP_3776	0.14	-0.5
4,304,425	+		PP_3776	0.14	-0.3
4,304,425	+		PP_3776	0.14	-0.6
4,304,425	+		PP_3776	0.14	-0.7
4,304,425	+		PP_3776	0.14	-0.7
4,304,426	-		PP_3776	0.14	+0.7
4,304,426	-		PP_3776	0.14	-0.5
4,304,426	-		PP_3776	0.14	+0.1
4,304,713	+		PP_3776	0.46	-0.3
4,304,713	+		PP_3776	0.46	-1.9
4,304,713	+		PP_3776	0.46	+1.6
4,304,713	+		PP_3776	0.46	+0.2
4,304,713	+		PP_3776	0.46	-0.5
4,304,714	-		PP_3776	0.46	-1.1
4,304,714	-		PP_3776	0.46	-0.3
4,304,714	-		PP_3776	0.46	+0.3
4,304,782	+		PP_3776	0.53	+0.2
4,304,800	-		PP_3776	0.55	-1.9
4,304,800	-		PP_3776	0.55	-0.9
4,304,800	-		PP_3776	0.55	-1.1
4,304,891	-		PP_3776	0.65	-0.9
4,304,935	-		PP_3776	0.70	-0.3
4,304,935	-		PP_3776	0.70	-0.2
4,305,024	+		PP_3776	0.80	-1.1
4,305,025	-		PP_3776	0.80	-0.4
4,305,128	-				-0.4
4,305,128	-				-0.5
4,305,174	+				-0.2
4,305,255	+				-0.5
4,305,256	-				+0.6