Strain Fitness in Pseudomonas putida KT2440 around PP_0317

Experiment: Carnitine Hydrochloride (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0316 and PP_0317 are separated by 108 nucleotidesPP_0317 and PP_0318 are separated by 266 nucleotidesPP_0318 and PP_0319 overlap by 4 nucleotidesPP_0319 and PP_0320 are separated by 182 nucleotides PP_0316: PP_0316 - putative glycine-betaine dioxygenase subunit, at 379,704 to 380,810 _0316 PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544 _0317 PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041 _0318 PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340 _0319 PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460 _0320 Position (kb) 380 381 382 383Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 380.091 kb on + strand, within PP_0316at 380.091 kb on + strand, within PP_0316at 380.111 kb on + strand, within PP_0316at 380.145 kb on + strand, within PP_0316at 380.145 kb on + strand, within PP_0316at 380.146 kb on - strand, within PP_0316at 380.211 kb on + strand, within PP_0316at 380.211 kb on + strand, within PP_0316at 380.212 kb on - strand, within PP_0316at 380.212 kb on - strand, within PP_0316at 380.317 kb on - strand, within PP_0316at 380.355 kb on + strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.356 kb on - strand, within PP_0316at 380.394 kb on + strand, within PP_0316at 380.394 kb on + strand, within PP_0316at 380.666 kb on + strand, within PP_0316at 380.667 kb on - strand, within PP_0316at 380.667 kb on - strand, within PP_0316at 380.757 kb on + strandat 380.757 kb on + strandat 380.758 kb on - strandat 380.758 kb on - strandat 380.758 kb on - strandat 380.758 kb on - strandat 380.758 kb on - strandat 380.920 kb on + strandat 380.921 kb on - strandat 380.921 kb on - strandat 380.937 kb on + strandat 380.938 kb on - strandat 381.066 kb on + strandat 381.219 kb on + strandat 381.220 kb on - strand, within PP_0317at 381.220 kb on - strand, within PP_0317at 381.220 kb on - strand, within PP_0317at 381.287 kb on + strand, within PP_0317at 381.288 kb on - strand, within PP_0317at 381.288 kb on - strand, within PP_0317at 381.288 kb on - strand, within PP_0317at 381.461 kb on + strand, within PP_0317at 381.461 kb on + strand, within PP_0317at 381.462 kb on - strand, within PP_0317at 381.762 kb on - strand, within PP_0317at 381.905 kb on + strand, within PP_0317at 381.905 kb on + strand, within PP_0317at 381.942 kb on + strand, within PP_0317at 381.942 kb on + strand, within PP_0317at 381.942 kb on + strand, within PP_0317at 381.943 kb on - strand, within PP_0317at 381.991 kb on + strand, within PP_0317at 381.991 kb on + strand, within PP_0317at 382.044 kb on + strand, within PP_0317at 382.045 kb on - strand, within PP_0317at 382.045 kb on - strand, within PP_0317at 382.045 kb on - strand, within PP_0317at 382.172 kb on - strand, within PP_0317at 382.241 kb on - strand, within PP_0317at 382.287 kb on - strand, within PP_0317at 382.356 kb on + strand, within PP_0317at 382.357 kb on - strand, within PP_0317at 382.439 kb on + strandat 382.440 kb on - strandat 382.440 kb on - strandat 382.440 kb on - strandat 382.464 kb on - strandat 382.464 kb on - strandat 382.523 kb on + strandat 382.704 kb on - strandat 382.732 kb on + strandat 382.733 kb on - strandat 382.747 kb on + strandat 382.747 kb on + strandat 382.756 kb on + strandat 382.804 kb on + strandat 382.805 kb on - strandat 383.223 kb on + strand, within PP_0319at 383.224 kb on - strand, within PP_0319at 383.338 kb on + strandat 383.339 kb on - strandat 383.463 kb on + strandat 383.502 kb on + strandat 383.503 kb on - strandat 383.503 kb on - strandat 383.516 kb on + strandat 383.516 kb on + strandat 383.516 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.537 kb on + strandat 383.538 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
remove
380,091 + PP_0316 0.35 -1.6
380,091 + PP_0316 0.35 -2.5
380,111 + PP_0316 0.37 -3.1
380,145 + PP_0316 0.40 -1.6
380,145 + PP_0316 0.40 -4.0
380,146 - PP_0316 0.40 -1.2
380,211 + PP_0316 0.46 -2.2
380,211 + PP_0316 0.46 -3.1
380,212 - PP_0316 0.46 -1.4
380,212 - PP_0316 0.46 -3.1
380,317 - PP_0316 0.55 -1.4
380,355 + PP_0316 0.59 -4.1
380,356 - PP_0316 0.59 -2.1
380,356 - PP_0316 0.59 -2.6
380,356 - PP_0316 0.59 -1.0
380,356 - PP_0316 0.59 -3.3
380,394 + PP_0316 0.62 -3.0
380,394 + PP_0316 0.62 -1.3
380,666 + PP_0316 0.87 -2.5
380,667 - PP_0316 0.87 -1.2
380,667 - PP_0316 0.87 -3.0
380,757 + -2.6
380,757 + -2.6
380,758 - -2.1
380,758 - -2.2
380,758 - -2.0
380,758 - -0.8
380,758 - -2.8
380,920 + +0.6
380,921 - +0.5
380,921 - +0.7
380,937 + +0.4
380,938 - -0.5
381,066 + +0.4
381,219 + +1.3
381,220 - PP_0317 0.19 -0.3
381,220 - PP_0317 0.19 +0.1
381,220 - PP_0317 0.19 -1.4
381,287 + PP_0317 0.23 +0.4
381,288 - PP_0317 0.23 -0.1
381,288 - PP_0317 0.23 -0.2
381,288 - PP_0317 0.23 -0.5
381,461 + PP_0317 0.33 +0.9
381,461 + PP_0317 0.33 +0.3
381,462 - PP_0317 0.33 +0.6
381,762 - PP_0317 0.52 +0.4
381,905 + PP_0317 0.61 -0.3
381,905 + PP_0317 0.61 +0.3
381,942 + PP_0317 0.63 +0.3
381,942 + PP_0317 0.63 +0.1
381,942 + PP_0317 0.63 -0.4
381,943 - PP_0317 0.63 +0.7
381,991 + PP_0317 0.66 +0.1
381,991 + PP_0317 0.66 -0.1
382,044 + PP_0317 0.69 +0.1
382,045 - PP_0317 0.69 -0.1
382,045 - PP_0317 0.69 -0.2
382,045 - PP_0317 0.69 +0.2
382,172 - PP_0317 0.77 +0.1
382,241 - PP_0317 0.81 +0.1
382,287 - PP_0317 0.84 +0.3
382,356 + PP_0317 0.88 -0.1
382,357 - PP_0317 0.88 +0.6
382,439 + -0.3
382,440 - -0.6
382,440 - +0.1
382,440 - -0.3
382,464 - +0.3
382,464 - -0.3
382,523 + -0.6
382,704 - +0.4
382,732 + +0.5
382,733 - +0.7
382,747 + +0.2
382,747 + +0.1
382,756 + -0.6
382,804 + -0.0
382,805 - +0.7
383,223 + PP_0319 0.61 -2.1
383,224 - PP_0319 0.61 -0.3
383,338 + +0.2
383,339 - +0.3
383,463 + -0.7
383,502 + +1.0
383,503 - -0.1
383,503 - -0.9
383,516 + -0.8
383,516 + -0.1
383,516 + -1.6
383,528 + -0.1
383,528 + -0.4
383,528 + -0.3
383,528 + +0.3
383,528 + -0.2
383,528 + -0.4
383,528 + +0.6
383,529 - -0.3
383,529 - -0.7
383,529 - -0.7
383,529 - +0.9
383,529 - -0.2
383,537 + +0.7
383,538 - -1.2

Or see this region's nucleotide sequence