Strain Fitness in Pseudomonas putida KT2440 around PP_0296

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0294 and PP_0295 overlap by 4 nucleotidesPP_0295 and PP_0296 are separated by 84 nucleotidesPP_0296 and PP_0297 are separated by 452 nucleotides PP_0294: PP_0294 - Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data), at 353,151 to 354,329 _0294 PP_0295: PP_0295 - choline / betaine / carnitine ABC transporter - membrane subunit, at 354,326 to 355,171 _0295 PP_0296: PP_0296 - choline / betaine / carnitine ABC transporter - substrate binding protein, at 355,256 to 356,203 _0296 PP_0297: PP_0297 - L-serine dehydratase, at 356,656 to 358,032 _0297 Position (kb) 355 356 357Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 354.368 kb on - strandat 354.428 kb on - strand, within PP_0295at 354.577 kb on + strand, within PP_0295at 354.655 kb on - strand, within PP_0295at 354.739 kb on + strand, within PP_0295at 354.750 kb on + strand, within PP_0295at 354.802 kb on + strand, within PP_0295at 354.803 kb on - strandat 354.804 kb on + strand, within PP_0295at 354.804 kb on + strand, within PP_0295at 354.804 kb on + strand, within PP_0295at 354.804 kb on + strand, within PP_0295at 354.804 kb on + strand, within PP_0295at 354.805 kb on - strand, within PP_0295at 354.805 kb on - strand, within PP_0295at 354.805 kb on - strand, within PP_0295at 354.860 kb on + strand, within PP_0295at 354.860 kb on + strand, within PP_0295at 354.861 kb on - strand, within PP_0295at 354.861 kb on - strand, within PP_0295at 354.861 kb on - strand, within PP_0295at 355.137 kb on + strandat 355.137 kb on + strandat 355.137 kb on + strandat 355.137 kb on + strandat 355.138 kb on - strandat 355.151 kb on + strandat 355.152 kb on - strandat 355.165 kb on + strandat 355.174 kb on + strandat 355.193 kb on + strandat 355.193 kb on + strandat 355.193 kb on + strandat 355.193 kb on + strandat 355.194 kb on - strandat 355.194 kb on - strandat 355.242 kb on + strandat 355.243 kb on - strandat 355.243 kb on - strandat 355.249 kb on + strandat 355.249 kb on + strandat 355.249 kb on + strandat 355.249 kb on + strandat 355.250 kb on - strandat 355.264 kb on + strandat 355.264 kb on + strandat 355.264 kb on + strandat 355.265 kb on - strandat 355.265 kb on - strandat 355.265 kb on - strandat 355.404 kb on + strand, within PP_0296at 355.404 kb on + strand, within PP_0296at 355.404 kb on + strand, within PP_0296at 355.405 kb on - strand, within PP_0296at 355.405 kb on - strand, within PP_0296at 355.405 kb on - strand, within PP_0296at 355.405 kb on - strand, within PP_0296at 355.451 kb on - strand, within PP_0296at 355.451 kb on - strand, within PP_0296at 355.485 kb on + strand, within PP_0296at 355.486 kb on - strand, within PP_0296at 355.486 kb on - strand, within PP_0296at 355.560 kb on + strand, within PP_0296at 355.561 kb on - strand, within PP_0296at 355.771 kb on - strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.863 kb on + strand, within PP_0296at 355.863 kb on + strand, within PP_0296at 355.863 kb on + strand, within PP_0296at 355.864 kb on - strand, within PP_0296at 355.899 kb on - strand, within PP_0296at 355.998 kb on + strand, within PP_0296at 355.998 kb on + strand, within PP_0296at 355.998 kb on + strand, within PP_0296at 355.999 kb on - strand, within PP_0296at 355.999 kb on - strand, within PP_0296at 355.999 kb on - strand, within PP_0296at 356.037 kb on + strand, within PP_0296at 356.114 kb on + strandat 356.114 kb on + strandat 356.114 kb on + strandat 356.114 kb on + strandat 356.114 kb on + strandat 356.220 kb on + strandat 356.221 kb on - strandat 356.222 kb on - strandat 356.307 kb on + strandat 356.308 kb on - strandat 356.363 kb on + strandat 356.518 kb on - strandat 356.784 kb on - strandat 356.806 kb on + strand, within PP_0297at 356.807 kb on - strand, within PP_0297at 357.020 kb on - strand, within PP_0297at 357.041 kb on + strand, within PP_0297at 357.041 kb on + strand, within PP_0297at 357.042 kb on - strand, within PP_0297at 357.042 kb on - strand, within PP_0297at 357.042 kb on - strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.083 kb on - strand, within PP_0297at 357.083 kb on - strand, within PP_0297at 357.083 kb on - strand, within PP_0297at 357.085 kb on + strand, within PP_0297at 357.085 kb on + strand, within PP_0297at 357.086 kb on - strand, within PP_0297at 357.086 kb on - strand, within PP_0297at 357.086 kb on - strand, within PP_0297

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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354,368 - -1.4
354,428 - PP_0295 0.12 -4.4
354,577 + PP_0295 0.30 -1.7
354,655 - PP_0295 0.39 -2.3
354,739 + PP_0295 0.49 -3.0
354,750 + PP_0295 0.50 -3.5
354,802 + PP_0295 0.56 -1.3
354,803 - +1.7
354,804 + PP_0295 0.57 -1.4
354,804 + PP_0295 0.57 -1.9
354,804 + PP_0295 0.57 -4.0
354,804 + PP_0295 0.57 -2.2
354,804 + PP_0295 0.57 -2.3
354,805 - PP_0295 0.57 -3.3
354,805 - PP_0295 0.57 -1.5
354,805 - PP_0295 0.57 -1.1
354,860 + PP_0295 0.63 -2.4
354,860 + PP_0295 0.63 -5.0
354,861 - PP_0295 0.63 -2.7
354,861 - PP_0295 0.63 -3.8
354,861 - PP_0295 0.63 -3.7
355,137 + -3.0
355,137 + -3.4
355,137 + -2.5
355,137 + -3.2
355,138 - -1.5
355,151 + -2.5
355,152 - -2.7
355,165 + -2.6
355,174 + -0.8
355,193 + -0.6
355,193 + -3.7
355,193 + -2.5
355,193 + -2.0
355,194 - +0.7
355,194 - -1.1
355,242 + -2.4
355,243 - -1.7
355,243 - +2.4
355,249 + -2.7
355,249 + -2.4
355,249 + -1.9
355,249 + -2.5
355,250 - -1.1
355,264 + -2.5
355,264 + -1.6
355,264 + -4.1
355,265 - +0.4
355,265 - +2.0
355,265 - +1.9
355,404 + PP_0296 0.16 -2.6
355,404 + PP_0296 0.16 -2.3
355,404 + PP_0296 0.16 -3.9
355,405 - PP_0296 0.16 -0.1
355,405 - PP_0296 0.16 +0.0
355,405 - PP_0296 0.16 +0.0
355,405 - PP_0296 0.16 +0.3
355,451 - PP_0296 0.21 -0.5
355,451 - PP_0296 0.21 -0.7
355,485 + PP_0296 0.24 -1.8
355,486 - PP_0296 0.24 -1.4
355,486 - PP_0296 0.24 +1.0
355,560 + PP_0296 0.32 -2.5
355,561 - PP_0296 0.32 -0.9
355,771 - PP_0296 0.54 -1.3
355,805 + PP_0296 0.58 -2.5
355,805 + PP_0296 0.58 -2.0
355,805 + PP_0296 0.58 -0.6
355,805 + PP_0296 0.58 -2.2
355,863 + PP_0296 0.64 -3.9
355,863 + PP_0296 0.64 -4.0
355,863 + PP_0296 0.64 -2.2
355,864 - PP_0296 0.64 -1.6
355,899 - PP_0296 0.68 -1.7
355,998 + PP_0296 0.78 +0.2
355,998 + PP_0296 0.78 -3.5
355,998 + PP_0296 0.78 -1.4
355,999 - PP_0296 0.78 -2.7
355,999 - PP_0296 0.78 -3.1
355,999 - PP_0296 0.78 -1.4
356,037 + PP_0296 0.82 -3.2
356,114 + -2.5
356,114 + -1.6
356,114 + -4.3
356,114 + -2.3
356,114 + -2.4
356,220 + -2.5
356,221 - +0.9
356,222 - -0.2
356,307 + -3.4
356,308 - -0.6
356,363 + -0.6
356,518 - +0.7
356,784 - -1.3
356,806 + PP_0297 0.11 -0.3
356,807 - PP_0297 0.11 -0.3
357,020 - PP_0297 0.26 -0.3
357,041 + PP_0297 0.28 -0.7
357,041 + PP_0297 0.28 -0.3
357,042 - PP_0297 0.28 +1.0
357,042 - PP_0297 0.28 +0.6
357,042 - PP_0297 0.28 -0.9
357,082 + PP_0297 0.31 +0.2
357,082 + PP_0297 0.31 -0.2
357,082 + PP_0297 0.31 +0.3
357,082 + PP_0297 0.31 -0.7
357,083 - PP_0297 0.31 -1.2
357,083 - PP_0297 0.31 -1.1
357,083 - PP_0297 0.31 -0.7
357,085 + PP_0297 0.31 -0.3
357,085 + PP_0297 0.31 +0.2
357,086 - PP_0297 0.31 -1.4
357,086 - PP_0297 0.31 -0.5
357,086 - PP_0297 0.31 -2.1

Or see this region's nucleotide sequence