Strain Fitness in Pseudomonas putida KT2440 around PP_0318

Experiment: Carnitine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0317 and PP_0318 are separated by 266 nucleotidesPP_0318 and PP_0319 overlap by 4 nucleotidesPP_0319 and PP_0320 are separated by 182 nucleotides PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544 _0317 PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041 _0318 PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340 _0319 PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460 _0320 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1 2at 381.905 kb on + strand, within PP_0317at 381.905 kb on + strand, within PP_0317at 381.942 kb on + strand, within PP_0317at 381.942 kb on + strand, within PP_0317at 381.942 kb on + strand, within PP_0317at 381.943 kb on - strand, within PP_0317at 381.991 kb on + strand, within PP_0317at 381.991 kb on + strand, within PP_0317at 382.044 kb on + strand, within PP_0317at 382.045 kb on - strand, within PP_0317at 382.045 kb on - strand, within PP_0317at 382.045 kb on - strand, within PP_0317at 382.172 kb on - strand, within PP_0317at 382.241 kb on - strand, within PP_0317at 382.287 kb on - strand, within PP_0317at 382.356 kb on + strand, within PP_0317at 382.357 kb on - strand, within PP_0317at 382.439 kb on + strandat 382.440 kb on - strandat 382.440 kb on - strandat 382.440 kb on - strandat 382.464 kb on - strandat 382.464 kb on - strandat 382.523 kb on + strandat 382.704 kb on - strandat 382.732 kb on + strandat 382.733 kb on - strandat 382.747 kb on + strandat 382.747 kb on + strandat 382.756 kb on + strandat 382.804 kb on + strandat 382.805 kb on - strandat 383.223 kb on + strand, within PP_0319at 383.224 kb on - strand, within PP_0319at 383.338 kb on + strandat 383.339 kb on - strandat 383.463 kb on + strandat 383.502 kb on + strandat 383.503 kb on - strandat 383.503 kb on - strandat 383.516 kb on + strandat 383.516 kb on + strandat 383.516 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.528 kb on + strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.529 kb on - strandat 383.537 kb on + strandat 383.538 kb on - strandat 383.609 kb on + strandat 383.748 kb on - strand, within PP_0320at 383.814 kb on + strand, within PP_0320at 383.849 kb on + strand, within PP_0320at 383.849 kb on + strand, within PP_0320at 383.849 kb on + strand, within PP_0320at 383.850 kb on - strand, within PP_0320at 383.852 kb on + strand, within PP_0320at 383.852 kb on + strand, within PP_0320at 383.853 kb on - strand, within PP_0320at 383.883 kb on + strand, within PP_0320at 383.883 kb on + strand, within PP_0320at 383.884 kb on - strand, within PP_0320at 383.884 kb on - strand, within PP_0320at 383.886 kb on + strand, within PP_0320at 383.886 kb on + strand, within PP_0320at 383.886 kb on + strand, within PP_0320at 383.887 kb on - strand, within PP_0320at 383.946 kb on + strand, within PP_0320at 383.946 kb on + strand, within PP_0320at 383.947 kb on - strand, within PP_0320at 384.031 kb on - strand, within PP_0320

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N)
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381,905 + PP_0317 0.61 -1.5
381,905 + PP_0317 0.61 +0.1
381,942 + PP_0317 0.63 +0.6
381,942 + PP_0317 0.63 -0.6
381,942 + PP_0317 0.63 -0.2
381,943 - PP_0317 0.63 +0.4
381,991 + PP_0317 0.66 -0.0
381,991 + PP_0317 0.66 +0.1
382,044 + PP_0317 0.69 -0.3
382,045 - PP_0317 0.69 +0.7
382,045 - PP_0317 0.69 +0.3
382,045 - PP_0317 0.69 +0.0
382,172 - PP_0317 0.77 -0.4
382,241 - PP_0317 0.81 +0.2
382,287 - PP_0317 0.84 +0.3
382,356 + PP_0317 0.88 +1.1
382,357 - PP_0317 0.88 +0.7
382,439 + +0.9
382,440 - -0.3
382,440 - +0.7
382,440 - -2.0
382,464 - -0.2
382,464 - -0.6
382,523 + -0.3
382,704 - -0.1
382,732 + +0.3
382,733 - +2.6
382,747 + -0.4
382,747 + -0.4
382,756 + +0.4
382,804 + -0.1
382,805 - +0.9
383,223 + PP_0319 0.61 -0.9
383,224 - PP_0319 0.61 -0.1
383,338 + -0.1
383,339 - +0.4
383,463 + -0.2
383,502 + +0.0
383,503 - +0.6
383,503 - +0.9
383,516 + +0.0
383,516 + +0.6
383,516 + -0.4
383,528 + -0.9
383,528 + -1.0
383,528 + -1.1
383,528 + -0.3
383,528 + -0.4
383,528 + +0.2
383,528 + +0.4
383,529 - -0.2
383,529 - -0.1
383,529 - -0.5
383,529 - +0.6
383,529 - +0.8
383,537 + -0.4
383,538 - -0.5
383,609 + -0.4
383,748 - PP_0320 0.12 +0.6
383,814 + PP_0320 0.15 +0.2
383,849 + PP_0320 0.17 +0.5
383,849 + PP_0320 0.17 -0.4
383,849 + PP_0320 0.17 -0.2
383,850 - PP_0320 0.17 -0.5
383,852 + PP_0320 0.17 +1.0
383,852 + PP_0320 0.17 -0.1
383,853 - PP_0320 0.17 -0.1
383,883 + PP_0320 0.19 +0.4
383,883 + PP_0320 0.19 +0.7
383,884 - PP_0320 0.19 +0.2
383,884 - PP_0320 0.19 +0.5
383,886 + PP_0320 0.19 +0.8
383,886 + PP_0320 0.19 +0.2
383,886 + PP_0320 0.19 +0.0
383,887 - PP_0320 0.19 +0.2
383,946 + PP_0320 0.22 +0.7
383,946 + PP_0320 0.22 -0.5
383,947 - PP_0320 0.22 -0.8
384,031 - PP_0320 0.26 +0.2

Or see this region's nucleotide sequence