Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0316 and PP_0317 are separated by 108 nucleotides PP_0317 and PP_0318 are separated by 266 nucleotides PP_0318 and PP_0319 overlap by 4 nucleotides PP_0319 and PP_0320 are separated by 182 nucleotides
PP_0316: PP_0316 - putative glycine-betaine dioxygenase subunit, at 379,704 to 380,810
_0316
PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544
_0317
PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041
_0318
PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340
_0319
PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460
_0320
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 380.091 kb on + strand, within PP_0316 at 380.091 kb on + strand, within PP_0316 at 380.111 kb on + strand, within PP_0316 at 380.145 kb on + strand, within PP_0316 at 380.145 kb on + strand, within PP_0316 at 380.146 kb on - strand, within PP_0316 at 380.211 kb on + strand, within PP_0316 at 380.211 kb on + strand, within PP_0316 at 380.212 kb on - strand, within PP_0316 at 380.212 kb on - strand, within PP_0316 at 380.317 kb on - strand, within PP_0316 at 380.355 kb on + strand, within PP_0316 at 380.356 kb on - strand, within PP_0316 at 380.356 kb on - strand, within PP_0316 at 380.356 kb on - strand, within PP_0316 at 380.356 kb on - strand, within PP_0316 at 380.394 kb on + strand, within PP_0316 at 380.394 kb on + strand, within PP_0316 at 380.666 kb on + strand, within PP_0316 at 380.667 kb on - strand, within PP_0316 at 380.667 kb on - strand, within PP_0316 at 380.757 kb on + strand at 380.757 kb on + strand at 380.758 kb on - strand at 380.758 kb on - strand at 380.758 kb on - strand at 380.758 kb on - strand at 380.758 kb on - strand at 380.920 kb on + strand at 380.921 kb on - strand at 380.921 kb on - strand at 380.937 kb on + strand at 380.938 kb on - strand at 381.066 kb on + strand at 381.219 kb on + strand at 381.220 kb on - strand, within PP_0317 at 381.220 kb on - strand, within PP_0317 at 381.220 kb on - strand, within PP_0317 at 381.287 kb on + strand, within PP_0317 at 381.288 kb on - strand, within PP_0317 at 381.288 kb on - strand, within PP_0317 at 381.288 kb on - strand, within PP_0317 at 381.461 kb on + strand, within PP_0317 at 381.461 kb on + strand, within PP_0317 at 381.462 kb on - strand, within PP_0317 at 381.762 kb on - strand, within PP_0317 at 381.905 kb on + strand, within PP_0317 at 381.905 kb on + strand, within PP_0317 at 381.942 kb on + strand, within PP_0317 at 381.942 kb on + strand, within PP_0317 at 381.942 kb on + strand, within PP_0317 at 381.943 kb on - strand, within PP_0317 at 381.991 kb on + strand, within PP_0317 at 381.991 kb on + strand, within PP_0317 at 382.044 kb on + strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.172 kb on - strand, within PP_0317 at 382.241 kb on - strand, within PP_0317 at 382.287 kb on - strand, within PP_0317 at 382.356 kb on + strand, within PP_0317 at 382.357 kb on - strand, within PP_0317 at 382.439 kb on + strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.464 kb on - strand at 382.464 kb on - strand at 382.523 kb on + strand at 382.704 kb on - strand at 382.732 kb on + strand at 382.733 kb on - strand at 382.747 kb on + strand at 382.747 kb on + strand at 382.756 kb on + strand at 382.804 kb on + strand at 382.805 kb on - strand at 383.223 kb on + strand, within PP_0319 at 383.224 kb on - strand, within PP_0319 at 383.338 kb on + strand at 383.339 kb on - strand at 383.463 kb on + strand at 383.502 kb on + strand at 383.503 kb on - strand at 383.503 kb on - strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.537 kb on + strand at 383.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 380,091 + PP_0316 0.35 -2.4 380,091 + PP_0316 0.35 -3.6 380,111 + PP_0316 0.37 -4.2 380,145 + PP_0316 0.40 -3.3 380,145 + PP_0316 0.40 -3.1 380,146 - PP_0316 0.40 -3.3 380,211 + PP_0316 0.46 -1.3 380,211 + PP_0316 0.46 -2.2 380,212 - PP_0316 0.46 -3.5 380,212 - PP_0316 0.46 -3.2 380,317 - PP_0316 0.55 -1.8 380,355 + PP_0316 0.59 -1.7 380,356 - PP_0316 0.59 -3.2 380,356 - PP_0316 0.59 -2.3 380,356 - PP_0316 0.59 -1.1 380,356 - PP_0316 0.59 -2.1 380,394 + PP_0316 0.62 -4.7 380,394 + PP_0316 0.62 -2.5 380,666 + PP_0316 0.87 -1.6 380,667 - PP_0316 0.87 -1.3 380,667 - PP_0316 0.87 -3.1 380,757 + -3.7 380,757 + -1.8 380,758 - -3.2 380,758 - -2.3 380,758 - -2.1 380,758 - +0.1 380,758 - -1.9 380,920 + +0.9 380,921 - +0.5 380,921 - +0.7 380,937 + +0.5 380,938 - -0.4 381,066 + +0.3 381,219 + +1.1 381,220 - PP_0317 0.19 -0.3 381,220 - PP_0317 0.19 +0.0 381,220 - PP_0317 0.19 -0.1 381,287 + PP_0317 0.23 +0.2 381,288 - PP_0317 0.23 -0.1 381,288 - PP_0317 0.23 -0.1 381,288 - PP_0317 0.23 -0.0 381,461 + PP_0317 0.33 +0.2 381,461 + PP_0317 0.33 -0.4 381,462 - PP_0317 0.33 +0.5 381,762 - PP_0317 0.52 +0.3 381,905 + PP_0317 0.61 -1.5 381,905 + PP_0317 0.61 +0.1 381,942 + PP_0317 0.63 +0.6 381,942 + PP_0317 0.63 -0.6 381,942 + PP_0317 0.63 -0.2 381,943 - PP_0317 0.63 +0.4 381,991 + PP_0317 0.66 -0.0 381,991 + PP_0317 0.66 +0.1 382,044 + PP_0317 0.69 -0.3 382,045 - PP_0317 0.69 +0.7 382,045 - PP_0317 0.69 +0.3 382,045 - PP_0317 0.69 +0.0 382,172 - PP_0317 0.77 -0.4 382,241 - PP_0317 0.81 +0.2 382,287 - PP_0317 0.84 +0.3 382,356 + PP_0317 0.88 +1.1 382,357 - PP_0317 0.88 +0.7 382,439 + +0.9 382,440 - -0.3 382,440 - +0.7 382,440 - -2.0 382,464 - -0.2 382,464 - -0.6 382,523 + -0.3 382,704 - -0.1 382,732 + +0.3 382,733 - +2.6 382,747 + -0.4 382,747 + -0.4 382,756 + +0.4 382,804 + -0.1 382,805 - +0.9 383,223 + PP_0319 0.61 -0.9 383,224 - PP_0319 0.61 -0.1 383,338 + -0.1 383,339 - +0.4 383,463 + -0.2 383,502 + +0.0 383,503 - +0.6 383,503 - +0.9 383,516 + +0.0 383,516 + +0.6 383,516 + -0.4 383,528 + -0.9 383,528 + -1.0 383,528 + -1.1 383,528 + -0.3 383,528 + -0.4 383,528 + +0.2 383,528 + +0.4 383,529 - -0.2 383,529 - -0.1 383,529 - -0.5 383,529 - +0.6 383,529 - +0.8 383,537 + -0.4 383,538 - -0.5
Or see this region's nucleotide sequence