Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0292 and PP_0293 are separated by 10 nucleotides PP_0293 and PP_0294 are separated by 117 nucleotides PP_0294 and PP_0295 overlap by 4 nucleotides PP_0295 and PP_0296 are separated by 84 nucleotides
PP_0292: PP_0292 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 351,515 to 352,252
_0292
PP_0293: PP_0293 - Imidazole glycerol phosphate synthase subunit HisF, at 352,263 to 353,033
_0293
PP_0294: PP_0294 - Choline / carnitine / glycine betaine ABC transporter, ATPase component <small>(from data)</small>, at 353,151 to 354,329
_0294
PP_0295: PP_0295 - choline / betaine / carnitine ABC transporter - membrane subunit, at 354,326 to 355,171
_0295
PP_0296: PP_0296 - choline / betaine / carnitine ABC transporter - substrate binding protein, at 355,256 to 356,203
_0296
Position (kb) 353
354
355 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 352.193 kb on + strand at 352.193 kb on + strand at 352.194 kb on - strand at 352.194 kb on - strand at 352.194 kb on - strand at 352.194 kb on - strand at 352.241 kb on + strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.242 kb on - strand at 352.457 kb on + strand, within PP_0293 at 352.457 kb on + strand, within PP_0293 at 352.457 kb on + strand, within PP_0293 at 352.977 kb on + strand at 352.977 kb on + strand at 352.978 kb on - strand at 353.001 kb on + strand at 353.002 kb on - strand at 353.002 kb on - strand at 353.427 kb on - strand, within PP_0294 at 353.519 kb on + strand, within PP_0294 at 353.542 kb on + strand, within PP_0294 at 353.542 kb on + strand, within PP_0294 at 353.543 kb on - strand, within PP_0294 at 353.543 kb on - strand, within PP_0294 at 353.618 kb on + strand, within PP_0294 at 353.618 kb on + strand, within PP_0294 at 354.113 kb on + strand, within PP_0294 at 354.114 kb on - strand, within PP_0294 at 354.114 kb on - strand, within PP_0294 at 354.368 kb on - strand at 354.428 kb on - strand, within PP_0295 at 354.577 kb on + strand, within PP_0295 at 354.655 kb on - strand, within PP_0295 at 354.739 kb on + strand, within PP_0295 at 354.750 kb on + strand, within PP_0295 at 354.802 kb on + strand, within PP_0295 at 354.803 kb on - strand at 354.804 kb on + strand, within PP_0295 at 354.804 kb on + strand, within PP_0295 at 354.804 kb on + strand, within PP_0295 at 354.804 kb on + strand, within PP_0295 at 354.804 kb on + strand, within PP_0295 at 354.805 kb on - strand, within PP_0295 at 354.805 kb on - strand, within PP_0295 at 354.805 kb on - strand, within PP_0295 at 354.860 kb on + strand, within PP_0295 at 354.860 kb on + strand, within PP_0295 at 354.861 kb on - strand, within PP_0295 at 354.861 kb on - strand, within PP_0295 at 354.861 kb on - strand, within PP_0295 at 355.137 kb on + strand at 355.137 kb on + strand at 355.137 kb on + strand at 355.137 kb on + strand at 355.138 kb on - strand at 355.151 kb on + strand at 355.152 kb on - strand at 355.165 kb on + strand at 355.174 kb on + strand at 355.193 kb on + strand at 355.193 kb on + strand at 355.193 kb on + strand at 355.193 kb on + strand at 355.194 kb on - strand at 355.194 kb on - strand at 355.242 kb on + strand at 355.243 kb on - strand at 355.243 kb on - strand at 355.249 kb on + strand at 355.249 kb on + strand at 355.249 kb on + strand at 355.249 kb on + strand at 355.250 kb on - strand at 355.264 kb on + strand at 355.264 kb on + strand at 355.264 kb on + strand at 355.265 kb on - strand at 355.265 kb on - strand at 355.265 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 352,193 + -2.3 352,193 + -3.1 352,194 - -3.2 352,194 - -1.2 352,194 - -3.2 352,194 - -3.6 352,241 + -0.7 352,242 - -2.8 352,242 - -1.9 352,242 - -2.8 352,242 - -2.2 352,242 - -1.1 352,242 - -2.9 352,457 + PP_0293 0.25 -2.5 352,457 + PP_0293 0.25 -1.5 352,457 + PP_0293 0.25 -2.7 352,977 + -2.5 352,977 + -2.4 352,978 - -2.4 353,001 + -2.0 353,002 - -2.3 353,002 - -3.1 353,427 - PP_0294 0.23 -3.2 353,519 + PP_0294 0.31 -1.9 353,542 + PP_0294 0.33 -1.8 353,542 + PP_0294 0.33 -1.2 353,543 - PP_0294 0.33 -1.2 353,543 - PP_0294 0.33 -0.9 353,618 + PP_0294 0.40 -3.3 353,618 + PP_0294 0.40 -2.7 354,113 + PP_0294 0.82 -3.8 354,114 - PP_0294 0.82 -3.5 354,114 - PP_0294 0.82 -4.5 354,368 - -1.5 354,428 - PP_0295 0.12 -1.9 354,577 + PP_0295 0.30 -3.1 354,655 - PP_0295 0.39 -2.4 354,739 + PP_0295 0.49 -3.1 354,750 + PP_0295 0.50 -1.6 354,802 + PP_0295 0.56 -1.4 354,803 - +1.6 354,804 + PP_0295 0.57 -3.1 354,804 + PP_0295 0.57 -4.3 354,804 + PP_0295 0.57 -3.1 354,804 + PP_0295 0.57 -1.6 354,804 + PP_0295 0.57 -2.8 354,805 - PP_0295 0.57 -3.0 354,805 - PP_0295 0.57 -1.6 354,805 - PP_0295 0.57 -2.2 354,860 + PP_0295 0.63 -0.9 354,860 + PP_0295 0.63 -2.8 354,861 - PP_0295 0.63 -5.9 354,861 - PP_0295 0.63 -2.6 354,861 - PP_0295 0.63 -2.9 355,137 + -2.1 355,137 + -2.5 355,137 + -2.6 355,137 + -2.8 355,138 - -2.6 355,151 + -4.2 355,152 - -2.2 355,165 + -2.7 355,174 + -1.4 355,193 + -0.7 355,193 + -2.2 355,193 + -1.1 355,193 + -2.1 355,194 - +0.6 355,194 - -0.9 355,242 + -2.5 355,243 - -3.4 355,243 - +2.3 355,249 + -1.2 355,249 + -1.5 355,249 + -2.0 355,249 + -1.8 355,250 - -0.2 355,264 + -2.6 355,264 + -1.7 355,264 + -3.2 355,265 - +0.3 355,265 - +2.2 355,265 - +1.4
Or see this region's nucleotide sequence