Strain Fitness in Pseudomonas putida KT2440 around PP_4430

Experiment: Choline chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride (N)
5,024,712	-		PP_4429	0.38	+0.1
5,024,825	+		PP_4429	0.46	-0.1
5,024,900	+		PP_4429	0.51	+0.5
5,024,900	+		PP_4429	0.51	-0.4
5,024,901	-		PP_4429	0.52	+0.4
5,024,916	+		PP_4429	0.53	-0.5
5,024,916	+		PP_4429	0.53	-0.2
5,024,916	+		PP_4429	0.53	-0.4
5,024,917	-		PP_4429	0.53	-0.5
5,024,963	+		PP_4429	0.56	+0.7
5,024,963	+		PP_4429	0.56	-2.5
5,024,963	+		PP_4429	0.56	+0.0
5,024,963	+		PP_4429	0.56	+0.4
5,024,963	+		PP_4429	0.56	-0.7
5,024,963	+		PP_4429	0.56	+0.1
5,024,964	-		PP_4429	0.56	-3.0
5,024,964	-		PP_4429	0.56	+0.0
5,024,964	-		PP_4429	0.56	+0.3
5,024,964	-		PP_4429	0.56	-0.7
5,024,964	-		PP_4429	0.56	-0.1
5,024,964	-		PP_4429	0.56	+0.7
5,024,997	+		PP_4429	0.58	+0.6
5,024,997	+		PP_4429	0.58	+0.6
5,024,998	-		PP_4429	0.58	-0.5
5,024,998	-		PP_4429	0.58	-0.1
5,024,998	-		PP_4429	0.58	+0.1
5,024,998	-		PP_4429	0.58	-0.0
5,025,013	+		PP_4429	0.60	-1.2
5,025,013	+		PP_4429	0.60	-0.4
5,025,014	-		PP_4429	0.60	-0.5
5,025,014	-		PP_4429	0.60	+0.3
5,025,034	+		PP_4429	0.61	+0.4
5,025,035	-		PP_4429	0.61	+0.2
5,025,035	-		PP_4429	0.61	-0.6
5,025,058	+		PP_4429	0.63	-0.2
5,025,058	+		PP_4429	0.63	+0.3
5,025,058	+		PP_4429	0.63	+0.0
5,025,058	+		PP_4429	0.63	-0.2
5,025,059	-		PP_4429	0.63	+0.6
5,025,079	+		PP_4429	0.64	+0.1
5,025,137	+		PP_4429	0.68	+0.2
5,025,137	+		PP_4429	0.68	-1.2
5,025,138	-		PP_4429	0.68	-0.1
5,025,141	+		PP_4429	0.69	-0.4
5,025,142	-		PP_4429	0.69	+0.1
5,025,142	-		PP_4429	0.69	+0.0
5,025,142	-		PP_4429	0.69	-0.2
5,025,142	-		PP_4429	0.69	+0.7
5,025,142	-		PP_4429	0.69	+0.6
5,025,279	-		PP_4429	0.79	+0.1
5,025,300	-		PP_4429	0.80	+0.3
5,025,300	-		PP_4429	0.80	-0.5
5,025,319	+		PP_4429	0.81	-1.1
5,025,325	+		PP_4429	0.82	+0.3
5,025,325	+		PP_4429	0.82	+1.1
5,025,325	+		PP_4429	0.82	+0.2
5,025,326	-		PP_4429	0.82	+0.5
5,025,326	-		PP_4429	0.82	-1.2
5,025,417	+		PP_4429	0.88	-0.4
5,025,417	+				-1.5
5,025,417	+		PP_4429	0.88	-0.6
5,025,417	+		PP_4429	0.88	-1.3
5,025,417	+		PP_4429	0.88	-1.2
5,025,418	-		PP_4429	0.88	-1.6
5,025,418	-		PP_4429	0.88	-2.0
5,025,418	-		PP_4429	0.88	-0.9
5,025,418	-		PP_4429	0.88	+0.6
5,025,418	-		PP_4429	0.88	-0.4
5,025,426	+		PP_4429	0.89	+0.9
5,025,515	+				+0.6
5,025,516	-				-1.0
5,025,516	-				-0.3
5,025,516	-				-0.5
5,025,556	+				+0.1
5,025,557	-				-0.8
5,025,620	+				-0.1
5,025,620	+				-0.5
5,025,621	-				+0.5
5,025,624	-				+0.5
5,025,624	-				-0.4
5,025,651	+				-1.9
5,025,652	-				+0.2
5,025,652	-				-0.5
5,025,683	+				-0.3
5,025,683	+				-0.6
5,025,683	+				+0.5
5,025,683	+				-0.1
5,025,734	+				+0.3
5,025,735	-				-0.0
5,025,804	+		PP_4430	0.12	+0.1
5,025,805	-		PP_4430	0.12	+0.4
5,025,805	-		PP_4430	0.12	-0.1
5,025,805	-		PP_4430	0.12	-0.5
5,025,805	-		PP_4430	0.12	+0.0
5,025,836	+		PP_4430	0.15	-0.8
5,025,837	-		PP_4430	0.15	-1.8
5,025,837	-		PP_4430	0.15	+0.2
5,025,837	-		PP_4430	0.15	-0.5
5,025,878	+		PP_4430	0.19	+0.1
5,025,878	+		PP_4430	0.19	+0.2
5,025,878	+		PP_4430	0.19	-0.0
5,025,878	+		PP_4430	0.19	+0.5
5,025,879	-		PP_4430	0.19	-0.2
5,025,879	-		PP_4430	0.19	+0.4
5,025,904	+		PP_4430	0.22	-1.2
5,025,905	-		PP_4430	0.22	-0.5
5,025,905	-		PP_4430	0.22	-0.1
5,025,907	+		PP_4430	0.22	+0.2
5,025,908	-		PP_4430	0.22	-0.3
5,025,945	+		PP_4430	0.26	-0.2
5,025,946	-		PP_4430	0.26	-0.5
5,026,055	+		PP_4430	0.37	+0.3
5,026,055	+		PP_4430	0.37	+0.2
5,026,056	-		PP_4430	0.37	+1.0
5,026,056	-		PP_4430	0.37	-0.3
5,026,112	+		PP_4430	0.43	-0.0
5,026,112	+		PP_4430	0.43	-0.2
5,026,112	+		PP_4430	0.43	-0.2
5,026,112	+		PP_4430	0.43	+0.6
5,026,113	-		PP_4430	0.43	+0.1
5,026,113	-		PP_4430	0.43	+0.1
5,026,113	-		PP_4430	0.43	-0.1
5,026,113	-		PP_4430	0.43	+0.2
5,026,113	-		PP_4430	0.43	+0.0
5,026,144	+		PP_4430	0.46	+0.3
5,026,144	+		PP_4430	0.46	-0.2
5,026,144	+		PP_4430	0.46	+0.5
5,026,145	-		PP_4430	0.46	+0.3
5,026,145	-		PP_4430	0.46	-0.1
5,026,207	+		PP_4430	0.52	+0.0
5,026,207	+		PP_4430	0.52	-0.0
5,026,207	+		PP_4430	0.52	-0.6
5,026,207	+		PP_4430	0.52	+0.4
5,026,208	-				-0.2
5,026,208	-		PP_4430	0.52	+0.2
5,026,214	-		PP_4430	0.53	+0.7
5,026,214	-		PP_4430	0.53	-0.0
5,026,267	+		PP_4430	0.58	-0.6
5,026,268	-		PP_4430	0.59	-0.4
5,026,268	-		PP_4430	0.59	-0.3
5,026,413	+		PP_4430	0.73	-1.0
5,026,414	-		PP_4430	0.73	+0.0
5,026,414	-		PP_4430	0.73	-0.4
5,026,414	-		PP_4430	0.73	+0.1
5,026,498	-		PP_4430	0.82	+0.4
5,026,498	-		PP_4430	0.82	-0.3
5,026,501	+		PP_4430	0.82	-0.7
5,026,501	+		PP_4430	0.82	-0.1
5,026,501	+		PP_4430	0.82	+0.2
5,026,501	+		PP_4430	0.82	+0.0
5,026,501	+		PP_4430	0.82	-0.2
5,026,502	-		PP_4430	0.82	-1.0
5,026,502	-		PP_4430	0.82	+0.4
5,026,502	-		PP_4430	0.82	-0.2
5,026,502	-		PP_4430	0.82	+0.0
5,026,502	-		PP_4430	0.82	-0.2
5,026,502	-		PP_4430	0.82	-0.3
5,026,502	-		PP_4430	0.82	+0.5
5,026,537	+		PP_4430	0.86	+0.3
5,026,538	-		PP_4430	0.86	-0.1
5,026,538	-		PP_4430	0.86	-0.8
5,026,538	-		PP_4430	0.86	-0.2
5,026,538	-		PP_4430	0.86	-0.6
5,026,541	+		PP_4430	0.86	-0.6
5,026,541	+		PP_4430	0.86	-0.8
5,026,542	-		PP_4430	0.86	-0.5
5,026,557	-		PP_4430	0.88	+0.6
5,026,677	+				+0.1
5,026,677	+				-0.2
5,026,678	-				-0.0
5,026,678	-				+0.0
5,026,678	-				+0.3
5,026,678	-				+0.4
5,026,738	-				+0.1
5,026,748	-				+0.7
5,026,756	+				+0.2
5,026,756	+				-0.9
5,026,757	-				-0.0
5,026,765	-				+2.9
5,026,871	+		PP_4431	0.18	-0.2
5,026,871	+		PP_4431	0.18	-0.6
5,026,871	+		PP_4431	0.18	+0.4
5,026,872	-		PP_4431	0.18	-0.3
5,026,935	+		PP_4431	0.25	-0.9
5,026,941	+		PP_4431	0.25	-0.9
5,026,941	+		PP_4431	0.25	-0.1
5,027,004	+		PP_4431	0.32	-0.4
5,027,004	+		PP_4431	0.32	+0.0
5,027,004	+		PP_4431	0.32	-0.2
5,027,018	+		PP_4431	0.33	-0.1
5,027,018	+		PP_4431	0.33	+0.2
5,027,018	+		PP_4431	0.33	-0.6
5,027,019	-		PP_4431	0.33	-1.5
5,027,159	-		PP_4431	0.47	-0.3
5,027,176	-		PP_4431	0.49	+0.5
5,027,183	-		PP_4431	0.50	-0.4
5,027,220	+		PP_4431	0.53	-0.1
5,027,220	+		PP_4431	0.53	-0.2
5,027,221	-		PP_4431	0.53	+0.5
5,027,232	-		PP_4431	0.54	+0.2
5,027,232	-		PP_4431	0.54	-0.2
5,027,326	-		PP_4431	0.64	-1.3
5,027,356	+		PP_4431	0.67	-0.2
5,027,365	+		PP_4431	0.68	+0.2
5,027,366	-		PP_4431	0.68	+0.2
5,027,409	+		PP_4431	0.72	-0.3
5,027,409	+		PP_4431	0.72	-0.5
5,027,409	+		PP_4431	0.72	-0.4
5,027,409	+		PP_4431	0.72	-1.2
5,027,409	+		PP_4431	0.72	-0.6
5,027,412	+		PP_4431	0.73	+0.2
5,027,412	+		PP_4431	0.73	-1.4
5,027,412	+		PP_4431	0.73	-0.6
5,027,413	-		PP_4431	0.73	-0.4
5,027,413	-		PP_4431	0.73	-0.2
5,027,429	+		PP_4431	0.74	-1.1
5,027,429	+		PP_4431	0.74	-0.8
5,027,430	-		PP_4431	0.74	+0.4
5,027,430	-		PP_4431	0.74	-0.1
5,027,430	-		PP_4431	0.74	+0.3
5,027,430	-		PP_4431	0.74	+0.5
5,027,430	-		PP_4431	0.74	-0.4
5,027,577	+		PP_4431	0.89	-0.1
5,027,577	+		PP_4431	0.89	-0.0
5,027,577	+		PP_4431	0.89	-1.4
5,027,672	+				-0.2
5,027,673	-				+0.2