Strain Fitness in Pseudomonas simiae WCS417 around PS417_18925

Experiment: TIme6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18915 and PS417_18920 are separated by 9 nucleotidesPS417_18920 and PS417_18925 are separated by 54 nucleotidesPS417_18925 and PS417_18930 are separated by 28 nucleotidesPS417_18930 and PS417_18935 are separated by 26 nucleotides PS417_18915: PS417_18915 - hypothetical protein, at 4,097,059 to 4,097,733 _18915 PS417_18920: PS417_18920 - hypothetical protein, at 4,097,743 to 4,098,474 _18920 PS417_18925: PS417_18925 - flagellar motor switch protein FliY, at 4,098,529 to 4,099,359 _18925 PS417_18930: PS417_18930 - restriction endonuclease subunit S, at 4,099,388 to 4,100,260 _18930 PS417_18935: PS417_18935 - amino acid ABC transporter ATPase, at 4,100,287 to 4,101,804 _18935 Position (kb) 4098 4099 4100Strain fitness (log2 ratio) -2 -1 0 1at 4097.821 kb on - strand, within PS417_18920at 4097.821 kb on - strand, within PS417_18920at 4098.127 kb on - strand, within PS417_18920at 4098.310 kb on - strand, within PS417_18920at 4098.530 kb on + strandat 4098.531 kb on - strandat 4098.581 kb on + strandat 4098.875 kb on + strand, within PS417_18925at 4099.026 kb on + strand, within PS417_18925at 4099.027 kb on - strand, within PS417_18925at 4099.027 kb on - strand, within PS417_18925at 4099.058 kb on + strand, within PS417_18925at 4099.058 kb on + strand, within PS417_18925at 4099.058 kb on + strand, within PS417_18925at 4099.059 kb on - strand, within PS417_18925at 4099.059 kb on - strand, within PS417_18925at 4099.059 kb on - strand, within PS417_18925at 4099.214 kb on + strand, within PS417_18925at 4099.214 kb on + strand, within PS417_18925at 4099.214 kb on + strand, within PS417_18925at 4099.215 kb on - strand, within PS417_18925at 4099.220 kb on + strand, within PS417_18925at 4099.339 kb on - strandat 4099.367 kb on - strandat 4100.011 kb on - strand, within PS417_18930

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Per-strain Table

Position Strand Gene LocusTag Fraction TIme6-nophage
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4,097,821 - PS417_18920 0.11 +1.3
4,097,821 - PS417_18920 0.11 -0.4
4,098,127 - PS417_18920 0.52 -0.7
4,098,310 - PS417_18920 0.77 -0.3
4,098,530 + +0.4
4,098,531 - -0.6
4,098,581 + +0.2
4,098,875 + PS417_18925 0.42 -0.3
4,099,026 + PS417_18925 0.60 -0.9
4,099,027 - PS417_18925 0.60 -0.2
4,099,027 - PS417_18925 0.60 -1.2
4,099,058 + PS417_18925 0.64 -0.0
4,099,058 + PS417_18925 0.64 -2.0
4,099,058 + PS417_18925 0.64 -0.1
4,099,059 - PS417_18925 0.64 -0.7
4,099,059 - PS417_18925 0.64 -0.7
4,099,059 - PS417_18925 0.64 -1.0
4,099,214 + PS417_18925 0.82 -1.3
4,099,214 + PS417_18925 0.82 -0.0
4,099,214 + PS417_18925 0.82 +0.3
4,099,215 - PS417_18925 0.83 -0.6
4,099,220 + PS417_18925 0.83 -1.7
4,099,339 - +1.5
4,099,367 - +0.0
4,100,011 - PS417_18930 0.71 -0.9

Or see this region's nucleotide sequence