Experiment: TIme6-nophage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06080 and PS417_06085 are separated by 27 nucleotides PS417_06085 and PS417_06090 are separated by 27 nucleotides PS417_06090 and PS417_06095 are separated by 3 nucleotides PS417_06095 and PS417_06100 are separated by 96 nucleotides
PS417_06080: PS417_06080 - hypothetical protein, at 1,348,423 to 1,349,283
_06080
PS417_06085: PS417_06085 - 2-methylisocitrate lyase, at 1,349,311 to 1,350,138
_06085
PS417_06090: PS417_06090 - extensin, at 1,350,166 to 1,350,840
_06090
PS417_06095: PS417_06095 - energy transducer TonB, at 1,350,844 to 1,351,464
_06095
PS417_06100: PS417_06100 - SAM-dependent methyltransferase, at 1,351,561 to 1,352,343
_06100
Position (kb)
1350
1351 Strain fitness (log2 ratio)
-1
0
1
2 at 1349.690 kb on - strand, within PS417_06085 at 1349.863 kb on + strand, within PS417_06085 at 1349.863 kb on + strand, within PS417_06085 at 1349.936 kb on + strand, within PS417_06085 at 1349.937 kb on - strand, within PS417_06085 at 1349.937 kb on - strand, within PS417_06085 at 1350.064 kb on + strand at 1350.064 kb on + strand at 1350.065 kb on - strand at 1350.065 kb on - strand at 1350.065 kb on - strand at 1350.408 kb on + strand, within PS417_06090 at 1350.560 kb on + strand, within PS417_06090 at 1350.560 kb on + strand, within PS417_06090 at 1350.582 kb on + strand, within PS417_06090 at 1350.583 kb on - strand, within PS417_06090 at 1350.583 kb on - strand, within PS417_06090 at 1350.583 kb on - strand at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.778 kb on + strand at 1351.398 kb on + strand, within PS417_06095 at 1351.399 kb on - strand, within PS417_06095 at 1351.432 kb on + strand at 1351.433 kb on - strand at 1351.496 kb on + strand at 1351.537 kb on + strand at 1351.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TIme6-nophage remove 1,349,690 - PS417_06085 0.46 -0.6 1,349,863 + PS417_06085 0.67 +0.3 1,349,863 + PS417_06085 0.67 +0.1 1,349,936 + PS417_06085 0.75 +0.3 1,349,937 - PS417_06085 0.76 +0.7 1,349,937 - PS417_06085 0.76 +0.4 1,350,064 + +0.0 1,350,064 + -0.1 1,350,065 - +0.3 1,350,065 - +2.3 1,350,065 - -0.7 1,350,408 + PS417_06090 0.36 +0.7 1,350,560 + PS417_06090 0.58 +0.8 1,350,560 + PS417_06090 0.58 +0.2 1,350,582 + PS417_06090 0.62 -0.0 1,350,583 - PS417_06090 0.62 -0.6 1,350,583 - PS417_06090 0.62 -0.5 1,350,583 - +1.5 1,350,586 + PS417_06090 0.62 +0.3 1,350,586 + PS417_06090 0.62 +0.3 1,350,586 + PS417_06090 0.62 +2.2 1,350,586 + PS417_06090 0.62 -0.5 1,350,586 + PS417_06090 0.62 +1.5 1,350,587 - PS417_06090 0.62 -0.4 1,350,587 - PS417_06090 0.62 -0.6 1,350,587 - PS417_06090 0.62 +1.0 1,350,587 - PS417_06090 0.62 -0.2 1,350,587 - PS417_06090 0.62 +2.5 1,350,587 - PS417_06090 0.62 +0.4 1,350,587 - PS417_06090 0.62 +0.3 1,350,587 - PS417_06090 0.62 +0.4 1,350,587 - PS417_06090 0.62 -0.3 1,350,778 + +0.9 1,351,398 + PS417_06095 0.89 -0.6 1,351,399 - PS417_06095 0.89 -0.2 1,351,432 + -0.5 1,351,433 - +0.7 1,351,496 + +0.1 1,351,537 + -0.0 1,351,541 - -0.3
Or see this region's nucleotide sequence