Strain Fitness in Pseudomonas simiae WCS417 around PS417_06090

Experiment: TIme6-nophage

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06080 and PS417_06085 are separated by 27 nucleotidesPS417_06085 and PS417_06090 are separated by 27 nucleotidesPS417_06090 and PS417_06095 are separated by 3 nucleotidesPS417_06095 and PS417_06100 are separated by 96 nucleotides PS417_06080: PS417_06080 - hypothetical protein, at 1,348,423 to 1,349,283 _06080 PS417_06085: PS417_06085 - 2-methylisocitrate lyase, at 1,349,311 to 1,350,138 _06085 PS417_06090: PS417_06090 - extensin, at 1,350,166 to 1,350,840 _06090 PS417_06095: PS417_06095 - energy transducer TonB, at 1,350,844 to 1,351,464 _06095 PS417_06100: PS417_06100 - SAM-dependent methyltransferase, at 1,351,561 to 1,352,343 _06100 Position (kb) 1350 1351Strain fitness (log2 ratio) -1 0 1 2at 1349.690 kb on - strand, within PS417_06085at 1349.863 kb on + strand, within PS417_06085at 1349.863 kb on + strand, within PS417_06085at 1349.936 kb on + strand, within PS417_06085at 1349.937 kb on - strand, within PS417_06085at 1349.937 kb on - strand, within PS417_06085at 1350.064 kb on + strandat 1350.064 kb on + strandat 1350.065 kb on - strandat 1350.065 kb on - strandat 1350.065 kb on - strandat 1350.408 kb on + strand, within PS417_06090at 1350.560 kb on + strand, within PS417_06090at 1350.560 kb on + strand, within PS417_06090at 1350.582 kb on + strand, within PS417_06090at 1350.583 kb on - strand, within PS417_06090at 1350.583 kb on - strand, within PS417_06090at 1350.583 kb on - strandat 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.586 kb on + strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.587 kb on - strand, within PS417_06090at 1350.778 kb on + strandat 1351.398 kb on + strand, within PS417_06095at 1351.399 kb on - strand, within PS417_06095at 1351.432 kb on + strandat 1351.433 kb on - strandat 1351.496 kb on + strandat 1351.537 kb on + strandat 1351.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TIme6-nophage
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1,349,690 - PS417_06085 0.46 -0.6
1,349,863 + PS417_06085 0.67 +0.3
1,349,863 + PS417_06085 0.67 +0.1
1,349,936 + PS417_06085 0.75 +0.3
1,349,937 - PS417_06085 0.76 +0.7
1,349,937 - PS417_06085 0.76 +0.4
1,350,064 + +0.0
1,350,064 + -0.1
1,350,065 - +0.3
1,350,065 - +2.3
1,350,065 - -0.7
1,350,408 + PS417_06090 0.36 +0.7
1,350,560 + PS417_06090 0.58 +0.8
1,350,560 + PS417_06090 0.58 +0.2
1,350,582 + PS417_06090 0.62 -0.0
1,350,583 - PS417_06090 0.62 -0.6
1,350,583 - PS417_06090 0.62 -0.5
1,350,583 - +1.5
1,350,586 + PS417_06090 0.62 +0.3
1,350,586 + PS417_06090 0.62 +0.3
1,350,586 + PS417_06090 0.62 +2.2
1,350,586 + PS417_06090 0.62 -0.5
1,350,586 + PS417_06090 0.62 +1.5
1,350,587 - PS417_06090 0.62 -0.4
1,350,587 - PS417_06090 0.62 -0.6
1,350,587 - PS417_06090 0.62 +1.0
1,350,587 - PS417_06090 0.62 -0.2
1,350,587 - PS417_06090 0.62 +2.5
1,350,587 - PS417_06090 0.62 +0.4
1,350,587 - PS417_06090 0.62 +0.3
1,350,587 - PS417_06090 0.62 +0.4
1,350,587 - PS417_06090 0.62 -0.3
1,350,778 + +0.9
1,351,398 + PS417_06095 0.89 -0.6
1,351,399 - PS417_06095 0.89 -0.2
1,351,432 + -0.5
1,351,433 - +0.7
1,351,496 + +0.1
1,351,537 + -0.0
1,351,541 - -0.3

Or see this region's nucleotide sequence