Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0670 and PP_0671 are separated by 121 nucleotides PP_0671 and PP_0672 are separated by 249 nucleotides
PP_0670: PP_0670 - Transporter, bile acid/Na+ symporter family, at 779,517 to 780,470
_0670
PP_0671: PP_0671 - serine hydroxymethyltransferase, at 780,592 to 781,845
_0671
PP_0672: PP_0672 - Sensory box protein, at 782,095 to 785,925
_0672
Position (kb) 780
781
782 Strain fitness (log2 ratio) -1
0
1 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.767 kb on + strand, within PP_0670 at 779.768 kb on - strand, within PP_0670 at 779.768 kb on - strand, within PP_0670 at 779.769 kb on + strand, within PP_0670 at 779.770 kb on - strand, within PP_0670 at 779.808 kb on + strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 779.809 kb on - strand, within PP_0670 at 780.037 kb on + strand, within PP_0670 at 780.038 kb on - strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.136 kb on + strand, within PP_0670 at 780.153 kb on - strand, within PP_0670 at 780.309 kb on + strand, within PP_0670 at 780.309 kb on + strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.310 kb on - strand, within PP_0670 at 780.329 kb on - strand, within PP_0670 at 780.329 kb on - strand, within PP_0670 at 780.408 kb on - strand at 780.418 kb on - strand at 780.430 kb on + strand at 780.431 kb on - strand at 780.495 kb on + strand at 780.496 kb on - strand at 780.496 kb on - strand at 780.496 kb on - strand at 780.516 kb on - strand at 780.536 kb on - strand at 780.539 kb on - strand at 780.539 kb on - strand at 780.579 kb on - strand at 781.910 kb on - strand at 782.074 kb on + strand at 782.375 kb on + strand at 782.375 kb on + strand at 782.376 kb on - strand at 782.560 kb on + strand, within PP_0672 at 782.561 kb on - strand, within PP_0672 at 782.561 kb on - strand, within PP_0672 at 782.561 kb on - strand, within PP_0672 at 782.816 kb on + strand, within PP_0672 at 782.820 kb on - strand, within PP_0672 at 782.820 kb on - strand, within PP_0672 at 782.820 kb on - strand, within PP_0672
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 779,767 + PP_0670 0.26 -0.6 779,767 + PP_0670 0.26 +0.3 779,767 + PP_0670 0.26 +0.5 779,767 + PP_0670 0.26 -0.3 779,768 - PP_0670 0.26 +0.0 779,768 - PP_0670 0.26 +0.2 779,769 + PP_0670 0.26 +0.3 779,770 - PP_0670 0.27 -0.2 779,808 + PP_0670 0.31 +0.5 779,809 - PP_0670 0.31 -0.7 779,809 - PP_0670 0.31 -0.2 779,809 - PP_0670 0.31 -1.1 780,037 + PP_0670 0.55 +1.0 780,038 - PP_0670 0.55 +0.2 780,136 + PP_0670 0.65 -0.4 780,136 + PP_0670 0.65 -0.1 780,136 + PP_0670 0.65 +0.1 780,153 - PP_0670 0.67 -0.1 780,309 + PP_0670 0.83 +0.1 780,309 + PP_0670 0.83 -0.2 780,310 - PP_0670 0.83 -0.5 780,310 - PP_0670 0.83 +0.6 780,310 - PP_0670 0.83 +0.4 780,310 - PP_0670 0.83 +0.5 780,329 - PP_0670 0.85 +0.1 780,329 - PP_0670 0.85 +0.2 780,408 - +0.4 780,418 - -0.5 780,430 + +0.2 780,431 - +0.2 780,495 + -0.4 780,496 - -0.6 780,496 - +0.5 780,496 - -0.3 780,516 - -0.2 780,536 - -0.1 780,539 - +0.3 780,539 - +0.2 780,579 - -0.4 781,910 - -0.3 782,074 + -0.3 782,375 + -0.0 782,375 + -0.5 782,376 - +0.5 782,560 + PP_0672 0.12 +0.1 782,561 - PP_0672 0.12 -0.2 782,561 - PP_0672 0.12 -0.4 782,561 - PP_0672 0.12 -0.7 782,816 + PP_0672 0.19 +0.3 782,820 - PP_0672 0.19 +0.1 782,820 - PP_0672 0.19 -0.2 782,820 - PP_0672 0.19 -0.8
Or see this region's nucleotide sequence