Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4865 and PP_4866 overlap by 4 nucleotides PP_4866 and PP_4867 are separated by 154 nucleotides
PP_4865: PP_4865 - High-affinity branched-chain amino acid transport system permease protein BraE, at 5,530,965 to 5,532,272
_4865
PP_4866: PP_4866 - High-affinity branched-chain amino acid transport system permease protein BraD, at 5,532,269 to 5,533,183
_4866
PP_4867: PP_4867 - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like), at 5,533,338 to 5,534,474
_4867
Position (kb) 5532
5533
5534 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5531.401 kb on + strand, within PP_4865 at 5531.401 kb on + strand, within PP_4865 at 5531.401 kb on + strand, within PP_4865 at 5531.401 kb on + strand, within PP_4865 at 5531.401 kb on + strand, within PP_4865 at 5531.401 kb on + strand, within PP_4865 at 5531.401 kb on + strand, within PP_4865 at 5531.401 kb on + strand, within PP_4865 at 5531.402 kb on - strand, within PP_4865 at 5531.402 kb on - strand, within PP_4865 at 5531.402 kb on - strand at 5531.468 kb on - strand, within PP_4865 at 5531.468 kb on - strand, within PP_4865 at 5531.647 kb on + strand, within PP_4865 at 5531.647 kb on + strand, within PP_4865 at 5531.648 kb on - strand, within PP_4865 at 5531.750 kb on - strand, within PP_4865 at 5531.773 kb on + strand, within PP_4865 at 5531.788 kb on + strand, within PP_4865 at 5531.788 kb on + strand, within PP_4865 at 5531.788 kb on + strand, within PP_4865 at 5531.788 kb on + strand, within PP_4865 at 5531.789 kb on - strand, within PP_4865 at 5531.789 kb on - strand, within PP_4865 at 5531.860 kb on - strand, within PP_4865 at 5531.860 kb on - strand, within PP_4865 at 5531.860 kb on - strand, within PP_4865 at 5531.863 kb on + strand, within PP_4865 at 5531.863 kb on + strand, within PP_4865 at 5531.863 kb on + strand, within PP_4865 at 5531.864 kb on - strand, within PP_4865 at 5531.864 kb on - strand, within PP_4865 at 5531.864 kb on - strand at 5531.864 kb on - strand, within PP_4865 at 5531.864 kb on - strand, within PP_4865 at 5531.897 kb on - strand, within PP_4865 at 5531.897 kb on - strand, within PP_4865 at 5531.897 kb on - strand, within PP_4865 at 5531.897 kb on - strand, within PP_4865 at 5531.953 kb on + strand, within PP_4865 at 5531.953 kb on + strand, within PP_4865 at 5531.953 kb on + strand, within PP_4865 at 5531.954 kb on - strand, within PP_4865 at 5531.954 kb on - strand, within PP_4865 at 5531.971 kb on + strand, within PP_4865 at 5532.170 kb on + strand at 5532.171 kb on - strand at 5532.216 kb on - strand at 5532.242 kb on + strand at 5532.242 kb on + strand at 5532.243 kb on - strand at 5532.319 kb on + strand at 5532.319 kb on + strand at 5532.361 kb on - strand, within PP_4866 at 5532.498 kb on + strand, within PP_4866 at 5532.498 kb on + strand, within PP_4866 at 5532.498 kb on + strand, within PP_4866 at 5532.499 kb on - strand, within PP_4866 at 5532.499 kb on - strand, within PP_4866 at 5532.516 kb on + strand at 5532.516 kb on + strand, within PP_4866 at 5532.516 kb on + strand, within PP_4866 at 5532.516 kb on + strand, within PP_4866 at 5532.517 kb on - strand, within PP_4866 at 5532.517 kb on - strand, within PP_4866 at 5532.576 kb on + strand at 5532.576 kb on + strand, within PP_4866 at 5532.577 kb on - strand, within PP_4866 at 5532.666 kb on + strand, within PP_4866 at 5532.666 kb on + strand, within PP_4866 at 5532.666 kb on + strand, within PP_4866 at 5532.666 kb on + strand, within PP_4866 at 5532.667 kb on - strand, within PP_4866 at 5532.678 kb on + strand, within PP_4866 at 5532.679 kb on - strand, within PP_4866 at 5532.679 kb on - strand, within PP_4866 at 5532.730 kb on + strand, within PP_4866 at 5532.731 kb on - strand, within PP_4866 at 5532.731 kb on - strand, within PP_4866 at 5532.732 kb on + strand, within PP_4866 at 5532.732 kb on + strand, within PP_4866 at 5532.732 kb on + strand, within PP_4866 at 5532.732 kb on + strand, within PP_4866 at 5532.733 kb on - strand, within PP_4866 at 5532.733 kb on - strand, within PP_4866 at 5532.892 kb on + strand, within PP_4866 at 5532.893 kb on - strand, within PP_4866 at 5532.893 kb on - strand, within PP_4866 at 5532.906 kb on + strand, within PP_4866 at 5532.906 kb on + strand, within PP_4866 at 5532.934 kb on - strand, within PP_4866 at 5533.006 kb on - strand, within PP_4866 at 5533.053 kb on + strand, within PP_4866 at 5533.053 kb on + strand, within PP_4866 at 5533.053 kb on + strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.054 kb on - strand, within PP_4866 at 5533.095 kb on + strand at 5533.095 kb on + strand at 5533.095 kb on + strand at 5533.095 kb on + strand at 5533.096 kb on - strand at 5533.096 kb on - strand at 5533.108 kb on - strand at 5533.108 kb on - strand at 5533.108 kb on - strand at 5533.275 kb on + strand at 5533.275 kb on + strand at 5533.282 kb on - strand at 5533.291 kb on + strand at 5533.340 kb on - strand at 5533.364 kb on - strand at 5533.364 kb on - strand at 5533.387 kb on + strand at 5533.388 kb on - strand at 5533.396 kb on + strand at 5533.397 kb on - strand at 5533.547 kb on - strand, within PP_4867 at 5533.552 kb on + strand, within PP_4867 at 5533.553 kb on - strand, within PP_4867 at 5533.562 kb on - strand, within PP_4867 at 5533.651 kb on + strand, within PP_4867 at 5533.651 kb on + strand, within PP_4867 at 5533.651 kb on + strand, within PP_4867 at 5533.652 kb on - strand, within PP_4867 at 5533.652 kb on - strand, within PP_4867 at 5533.652 kb on - strand, within PP_4867 at 5533.652 kb on - strand, within PP_4867 at 5533.666 kb on + strand, within PP_4867 at 5533.667 kb on - strand, within PP_4867 at 5533.667 kb on - strand, within PP_4867 at 5533.801 kb on + strand, within PP_4867 at 5533.801 kb on + strand, within PP_4867 at 5533.820 kb on + strand, within PP_4867 at 5533.879 kb on + strand, within PP_4867 at 5533.880 kb on - strand, within PP_4867 at 5534.002 kb on + strand, within PP_4867 at 5534.003 kb on - strand, within PP_4867 at 5534.018 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.131 kb on - strand, within PP_4867 at 5534.131 kb on - strand, within PP_4867
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 5,531,401 + PP_4865 0.33 -1.6 5,531,401 + PP_4865 0.33 -1.0 5,531,401 + PP_4865 0.33 -1.5 5,531,401 + PP_4865 0.33 -2.1 5,531,401 + PP_4865 0.33 -3.2 5,531,401 + PP_4865 0.33 -0.1 5,531,401 + PP_4865 0.33 -0.2 5,531,401 + PP_4865 0.33 -0.6 5,531,402 - PP_4865 0.33 -0.7 5,531,402 - PP_4865 0.33 -1.7 5,531,402 - +0.0 5,531,468 - PP_4865 0.38 -0.8 5,531,468 - PP_4865 0.38 -0.6 5,531,647 + PP_4865 0.52 -1.7 5,531,647 + PP_4865 0.52 +0.2 5,531,648 - PP_4865 0.52 -1.3 5,531,750 - PP_4865 0.60 -2.5 5,531,773 + PP_4865 0.62 -0.5 5,531,788 + PP_4865 0.63 -0.3 5,531,788 + PP_4865 0.63 -1.1 5,531,788 + PP_4865 0.63 -1.6 5,531,788 + PP_4865 0.63 -1.8 5,531,789 - PP_4865 0.63 -1.1 5,531,789 - PP_4865 0.63 -1.9 5,531,860 - PP_4865 0.68 +2.3 5,531,860 - PP_4865 0.68 -1.3 5,531,860 - PP_4865 0.68 -1.2 5,531,863 + PP_4865 0.69 -0.4 5,531,863 + PP_4865 0.69 -1.1 5,531,863 + PP_4865 0.69 -1.6 5,531,864 - PP_4865 0.69 -1.5 5,531,864 - PP_4865 0.69 +0.7 5,531,864 - +2.3 5,531,864 - PP_4865 0.69 -0.7 5,531,864 - PP_4865 0.69 -2.0 5,531,897 - PP_4865 0.71 -1.0 5,531,897 - PP_4865 0.71 -1.0 5,531,897 - PP_4865 0.71 -1.2 5,531,897 - PP_4865 0.71 +0.0 5,531,953 + PP_4865 0.76 -1.5 5,531,953 + PP_4865 0.76 -0.1 5,531,953 + PP_4865 0.76 -1.7 5,531,954 - PP_4865 0.76 -2.3 5,531,954 - PP_4865 0.76 -0.9 5,531,971 + PP_4865 0.77 -1.0 5,532,170 + -1.3 5,532,171 - +0.1 5,532,216 - -1.3 5,532,242 + -1.2 5,532,242 + -1.1 5,532,243 - -1.1 5,532,319 + -1.8 5,532,319 + -1.1 5,532,361 - PP_4866 0.10 -0.9 5,532,498 + PP_4866 0.25 -2.2 5,532,498 + PP_4866 0.25 -0.8 5,532,498 + PP_4866 0.25 -0.7 5,532,499 - PP_4866 0.25 +0.1 5,532,499 - PP_4866 0.25 -1.4 5,532,516 + -0.7 5,532,516 + PP_4866 0.27 -0.8 5,532,516 + PP_4866 0.27 -1.2 5,532,516 + PP_4866 0.27 -1.8 5,532,517 - PP_4866 0.27 -1.3 5,532,517 - PP_4866 0.27 -0.6 5,532,576 + -0.3 5,532,576 + PP_4866 0.34 -0.8 5,532,577 - PP_4866 0.34 -1.0 5,532,666 + PP_4866 0.43 -0.4 5,532,666 + PP_4866 0.43 -1.1 5,532,666 + PP_4866 0.43 -0.3 5,532,666 + PP_4866 0.43 -1.3 5,532,667 - PP_4866 0.43 -1.1 5,532,678 + PP_4866 0.45 -1.6 5,532,679 - PP_4866 0.45 -1.3 5,532,679 - PP_4866 0.45 -1.1 5,532,730 + PP_4866 0.50 -0.6 5,532,731 - PP_4866 0.50 -0.8 5,532,731 - PP_4866 0.50 -1.9 5,532,732 + PP_4866 0.51 -1.3 5,532,732 + PP_4866 0.51 -0.4 5,532,732 + PP_4866 0.51 -1.2 5,532,732 + PP_4866 0.51 -0.1 5,532,733 - PP_4866 0.51 -1.6 5,532,733 - PP_4866 0.51 -2.3 5,532,892 + PP_4866 0.68 -1.5 5,532,893 - PP_4866 0.68 -1.7 5,532,893 - PP_4866 0.68 -1.5 5,532,906 + PP_4866 0.70 -0.9 5,532,906 + PP_4866 0.70 -0.9 5,532,934 - PP_4866 0.73 -2.7 5,533,006 - PP_4866 0.81 -1.1 5,533,053 + PP_4866 0.86 -1.8 5,533,053 + PP_4866 0.86 -3.0 5,533,053 + PP_4866 0.86 -1.1 5,533,054 - PP_4866 0.86 -2.3 5,533,054 - PP_4866 0.86 -2.6 5,533,054 - PP_4866 0.86 -1.4 5,533,054 - PP_4866 0.86 -0.2 5,533,054 - PP_4866 0.86 -1.7 5,533,095 + -2.2 5,533,095 + -1.9 5,533,095 + -3.3 5,533,095 + +0.1 5,533,096 - +0.2 5,533,096 - -0.3 5,533,108 - -0.8 5,533,108 - -0.6 5,533,108 - -1.1 5,533,275 + -1.3 5,533,275 + -2.7 5,533,282 - -3.8 5,533,291 + -0.9 5,533,340 - +0.4 5,533,364 - -1.2 5,533,364 - -0.6 5,533,387 + -0.5 5,533,388 - -0.5 5,533,396 + -1.2 5,533,397 - -1.4 5,533,547 - PP_4867 0.18 -0.6 5,533,552 + PP_4867 0.19 -1.8 5,533,553 - PP_4867 0.19 -0.4 5,533,562 - PP_4867 0.20 -1.4 5,533,651 + PP_4867 0.28 -2.0 5,533,651 + PP_4867 0.28 -0.3 5,533,651 + PP_4867 0.28 -0.4 5,533,652 - PP_4867 0.28 -2.0 5,533,652 - PP_4867 0.28 -1.9 5,533,652 - PP_4867 0.28 -1.1 5,533,652 - PP_4867 0.28 +0.1 5,533,666 + PP_4867 0.29 -1.5 5,533,667 - PP_4867 0.29 -1.9 5,533,667 - PP_4867 0.29 -1.1 5,533,801 + PP_4867 0.41 -1.0 5,533,801 + PP_4867 0.41 -1.8 5,533,820 + PP_4867 0.42 -1.1 5,533,879 + PP_4867 0.48 -0.9 5,533,880 - PP_4867 0.48 -2.3 5,534,002 + PP_4867 0.58 -1.1 5,534,003 - PP_4867 0.58 -1.9 5,534,018 + PP_4867 0.60 -1.3 5,534,128 + PP_4867 0.69 -1.8 5,534,128 + PP_4867 0.69 -1.0 5,534,128 + PP_4867 0.69 -1.7 5,534,128 + PP_4867 0.69 -1.6 5,534,129 - PP_4867 0.70 -1.3 5,534,129 - PP_4867 0.70 -1.7 5,534,129 - PP_4867 0.70 +0.5 5,534,130 + PP_4867 0.70 -0.7 5,534,130 + PP_4867 0.70 -1.8 5,534,130 + PP_4867 0.70 -2.0 5,534,131 - PP_4867 0.70 -2.8 5,534,131 - PP_4867 0.70 -2.1
Or see this region's nucleotide sequence