Strain Fitness in Pseudomonas putida KT2440 around PP_4864

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4863 and PP_4864 overlap by 4 nucleotidesPP_4864 and PP_4865 overlap by 4 nucleotides PP_4863: PP_4863 - high-affinity branched-chain amino acid transporter, ATP-binding, at 5,529,380 to 5,530,096 _4863 PP_4864: PP_4864 - High-affinity branched-chain amino acid transport ATP-binding protein BraF, at 5,530,093 to 5,530,968 _4864 PP_4865: PP_4865 - High-affinity branched-chain amino acid transport system permease protein BraE, at 5,530,965 to 5,532,272 _4865 Position (kb) 5530 5531Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5529.164 kb on - strandat 5529.253 kb on + strandat 5529.301 kb on + strandat 5529.301 kb on + strandat 5529.301 kb on + strandat 5529.302 kb on - strandat 5529.302 kb on - strandat 5529.397 kb on - strandat 5529.474 kb on + strand, within PP_4863at 5529.474 kb on + strand, within PP_4863at 5529.474 kb on + strand, within PP_4863at 5529.474 kb on + strand, within PP_4863at 5529.475 kb on - strand, within PP_4863at 5529.475 kb on - strand, within PP_4863at 5529.475 kb on - strand, within PP_4863at 5529.475 kb on - strand, within PP_4863at 5529.529 kb on + strand, within PP_4863at 5529.529 kb on + strand, within PP_4863at 5529.529 kb on + strand, within PP_4863at 5529.530 kb on - strand, within PP_4863at 5529.530 kb on - strand, within PP_4863at 5529.530 kb on - strand, within PP_4863at 5529.530 kb on - strand, within PP_4863at 5529.530 kb on - strand, within PP_4863at 5529.530 kb on - strand, within PP_4863at 5529.735 kb on + strand, within PP_4863at 5529.735 kb on + strand, within PP_4863at 5529.735 kb on + strandat 5529.736 kb on - strand, within PP_4863at 5529.736 kb on - strand, within PP_4863at 5529.736 kb on - strand, within PP_4863at 5529.736 kb on - strand, within PP_4863at 5529.739 kb on + strand, within PP_4863at 5529.739 kb on + strand, within PP_4863at 5529.739 kb on + strand, within PP_4863at 5529.739 kb on + strand, within PP_4863at 5529.740 kb on - strand, within PP_4863at 5529.740 kb on - strand, within PP_4863at 5529.740 kb on - strand, within PP_4863at 5529.740 kb on - strand, within PP_4863at 5529.784 kb on + strand, within PP_4863at 5529.784 kb on + strand, within PP_4863at 5529.785 kb on - strand, within PP_4863at 5529.870 kb on + strand, within PP_4863at 5529.871 kb on - strand, within PP_4863at 5529.871 kb on - strand, within PP_4863at 5529.913 kb on + strand, within PP_4863at 5529.913 kb on + strand, within PP_4863at 5529.913 kb on + strand, within PP_4863at 5529.913 kb on + strand, within PP_4863at 5529.913 kb on + strand, within PP_4863at 5529.914 kb on - strand, within PP_4863at 5529.914 kb on - strand, within PP_4863at 5529.914 kb on - strand, within PP_4863at 5529.996 kb on - strand, within PP_4863at 5530.012 kb on + strand, within PP_4863at 5530.053 kb on + strandat 5530.053 kb on + strandat 5530.054 kb on - strandat 5530.054 kb on - strandat 5530.096 kb on + strandat 5530.096 kb on + strandat 5530.097 kb on - strandat 5530.125 kb on - strandat 5530.206 kb on + strand, within PP_4864at 5530.409 kb on + strand, within PP_4864at 5530.409 kb on + strand, within PP_4864at 5530.456 kb on + strand, within PP_4864at 5530.456 kb on + strand, within PP_4864at 5530.456 kb on + strand, within PP_4864at 5530.456 kb on + strand, within PP_4864at 5530.457 kb on - strand, within PP_4864at 5530.457 kb on - strand, within PP_4864at 5530.469 kb on + strand, within PP_4864at 5530.470 kb on - strand, within PP_4864at 5530.656 kb on + strand, within PP_4864at 5530.673 kb on + strand, within PP_4864at 5530.674 kb on - strand, within PP_4864at 5530.676 kb on + strand, within PP_4864at 5530.676 kb on + strand, within PP_4864at 5530.676 kb on + strand, within PP_4864at 5530.677 kb on - strand, within PP_4864at 5530.677 kb on - strand, within PP_4864at 5530.677 kb on - strand, within PP_4864at 5530.680 kb on + strand, within PP_4864at 5530.680 kb on + strand, within PP_4864at 5530.680 kb on + strand, within PP_4864at 5530.680 kb on + strand, within PP_4864at 5530.680 kb on + strand, within PP_4864at 5530.680 kb on + strand, within PP_4864at 5530.680 kb on + strand, within PP_4864at 5530.680 kb on + strand, within PP_4864at 5530.681 kb on - strand, within PP_4864at 5530.681 kb on - strand, within PP_4864at 5530.681 kb on - strand, within PP_4864at 5530.681 kb on - strand, within PP_4864at 5530.681 kb on - strand, within PP_4864at 5530.681 kb on - strand, within PP_4864at 5530.681 kb on - strand, within PP_4864at 5530.782 kb on + strand, within PP_4864at 5530.782 kb on + strand, within PP_4864at 5530.782 kb on + strand, within PP_4864at 5530.782 kb on + strand, within PP_4864at 5530.783 kb on - strand, within PP_4864at 5530.825 kb on + strand, within PP_4864at 5530.826 kb on - strand, within PP_4864at 5530.867 kb on + strand, within PP_4864at 5530.868 kb on - strand, within PP_4864at 5530.868 kb on - strand, within PP_4864at 5530.956 kb on + strandat 5530.956 kb on + strandat 5530.956 kb on + strandat 5530.956 kb on + strandat 5530.957 kb on - strandat 5530.982 kb on + strandat 5530.982 kb on + strandat 5530.983 kb on - strandat 5531.233 kb on + strand, within PP_4865at 5531.234 kb on - strand, within PP_4865at 5531.401 kb on + strand, within PP_4865at 5531.401 kb on + strand, within PP_4865at 5531.401 kb on + strand, within PP_4865at 5531.401 kb on + strand, within PP_4865at 5531.401 kb on + strand, within PP_4865at 5531.401 kb on + strand, within PP_4865at 5531.401 kb on + strand, within PP_4865at 5531.401 kb on + strand, within PP_4865at 5531.402 kb on - strand, within PP_4865at 5531.402 kb on - strand, within PP_4865at 5531.402 kb on - strandat 5531.468 kb on - strand, within PP_4865at 5531.468 kb on - strand, within PP_4865at 5531.647 kb on + strand, within PP_4865at 5531.647 kb on + strand, within PP_4865at 5531.648 kb on - strand, within PP_4865at 5531.750 kb on - strand, within PP_4865at 5531.773 kb on + strand, within PP_4865at 5531.788 kb on + strand, within PP_4865at 5531.788 kb on + strand, within PP_4865at 5531.788 kb on + strand, within PP_4865at 5531.788 kb on + strand, within PP_4865at 5531.789 kb on - strand, within PP_4865at 5531.789 kb on - strand, within PP_4865at 5531.860 kb on - strand, within PP_4865at 5531.860 kb on - strand, within PP_4865at 5531.860 kb on - strand, within PP_4865at 5531.863 kb on + strand, within PP_4865at 5531.863 kb on + strand, within PP_4865at 5531.863 kb on + strand, within PP_4865at 5531.864 kb on - strand, within PP_4865at 5531.864 kb on - strand, within PP_4865at 5531.864 kb on - strandat 5531.864 kb on - strand, within PP_4865at 5531.864 kb on - strand, within PP_4865at 5531.897 kb on - strand, within PP_4865at 5531.897 kb on - strand, within PP_4865at 5531.897 kb on - strand, within PP_4865at 5531.897 kb on - strand, within PP_4865at 5531.953 kb on + strand, within PP_4865at 5531.953 kb on + strand, within PP_4865at 5531.953 kb on + strand, within PP_4865at 5531.954 kb on - strand, within PP_4865at 5531.954 kb on - strand, within PP_4865

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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5,529,164 - -0.5
5,529,253 + +0.6
5,529,301 + +0.2
5,529,301 + +1.3
5,529,301 + +0.2
5,529,302 - +0.3
5,529,302 - +1.1
5,529,397 - -1.6
5,529,474 + PP_4863 0.13 -0.5
5,529,474 + PP_4863 0.13 -1.1
5,529,474 + PP_4863 0.13 -1.2
5,529,474 + PP_4863 0.13 -1.7
5,529,475 - PP_4863 0.13 -2.2
5,529,475 - PP_4863 0.13 -2.9
5,529,475 - PP_4863 0.13 +0.5
5,529,475 - PP_4863 0.13 -1.2
5,529,529 + PP_4863 0.21 -0.5
5,529,529 + PP_4863 0.21 -1.6
5,529,529 + PP_4863 0.21 -2.3
5,529,530 - PP_4863 0.21 +0.7
5,529,530 - PP_4863 0.21 -1.1
5,529,530 - PP_4863 0.21 -1.5
5,529,530 - PP_4863 0.21 -0.6
5,529,530 - PP_4863 0.21 -0.5
5,529,530 - PP_4863 0.21 -0.9
5,529,735 + PP_4863 0.50 -1.2
5,529,735 + PP_4863 0.50 -2.4
5,529,735 + +1.3
5,529,736 - PP_4863 0.50 -0.6
5,529,736 - PP_4863 0.50 -1.5
5,529,736 - PP_4863 0.50 -1.3
5,529,736 - PP_4863 0.50 -1.5
5,529,739 + PP_4863 0.50 -0.7
5,529,739 + PP_4863 0.50 -1.4
5,529,739 + PP_4863 0.50 -1.5
5,529,739 + PP_4863 0.50 -2.3
5,529,740 - PP_4863 0.50 -1.5
5,529,740 - PP_4863 0.50 -1.4
5,529,740 - PP_4863 0.50 -0.9
5,529,740 - PP_4863 0.50 -1.1
5,529,784 + PP_4863 0.56 -2.1
5,529,784 + PP_4863 0.56 -1.0
5,529,785 - PP_4863 0.56 -1.0
5,529,870 + PP_4863 0.68 +0.2
5,529,871 - PP_4863 0.68 -1.2
5,529,871 - PP_4863 0.68 -1.2
5,529,913 + PP_4863 0.74 -1.5
5,529,913 + PP_4863 0.74 -0.8
5,529,913 + PP_4863 0.74 -0.5
5,529,913 + PP_4863 0.74 -0.8
5,529,913 + PP_4863 0.74 -0.6
5,529,914 - PP_4863 0.74 -2.6
5,529,914 - PP_4863 0.74 -1.6
5,529,914 - PP_4863 0.74 -1.2
5,529,996 - PP_4863 0.86 -3.4
5,530,012 + PP_4863 0.88 -1.4
5,530,053 + -1.4
5,530,053 + -2.1
5,530,054 - +1.1
5,530,054 - -0.7
5,530,096 + -1.6
5,530,096 + -0.9
5,530,097 - -0.3
5,530,125 - -3.1
5,530,206 + PP_4864 0.13 -1.0
5,530,409 + PP_4864 0.36 -1.6
5,530,409 + PP_4864 0.36 -1.2
5,530,456 + PP_4864 0.41 -1.5
5,530,456 + PP_4864 0.41 -0.9
5,530,456 + PP_4864 0.41 -1.6
5,530,456 + PP_4864 0.41 -0.2
5,530,457 - PP_4864 0.42 -1.1
5,530,457 - PP_4864 0.42 -0.3
5,530,469 + PP_4864 0.43 -1.3
5,530,470 - PP_4864 0.43 -1.7
5,530,656 + PP_4864 0.64 -0.7
5,530,673 + PP_4864 0.66 -0.7
5,530,674 - PP_4864 0.66 -1.2
5,530,676 + PP_4864 0.67 -0.8
5,530,676 + PP_4864 0.67 -1.4
5,530,676 + PP_4864 0.67 -0.6
5,530,677 - PP_4864 0.67 -1.1
5,530,677 - PP_4864 0.67 -1.0
5,530,677 - PP_4864 0.67 -1.1
5,530,680 + PP_4864 0.67 -1.8
5,530,680 + PP_4864 0.67 -1.6
5,530,680 + PP_4864 0.67 -1.4
5,530,680 + PP_4864 0.67 -1.5
5,530,680 + PP_4864 0.67 -2.0
5,530,680 + PP_4864 0.67 -1.4
5,530,680 + PP_4864 0.67 -2.1
5,530,680 + PP_4864 0.67 -1.2
5,530,681 - PP_4864 0.67 -0.9
5,530,681 - PP_4864 0.67 -1.3
5,530,681 - PP_4864 0.67 -1.5
5,530,681 - PP_4864 0.67 -3.6
5,530,681 - PP_4864 0.67 -2.1
5,530,681 - PP_4864 0.67 -2.8
5,530,681 - PP_4864 0.67 -0.7
5,530,782 + PP_4864 0.79 -1.3
5,530,782 + PP_4864 0.79 -0.8
5,530,782 + PP_4864 0.79 -1.2
5,530,782 + PP_4864 0.79 -3.1
5,530,783 - PP_4864 0.79 -1.7
5,530,825 + PP_4864 0.84 -1.4
5,530,826 - PP_4864 0.84 -0.6
5,530,867 + PP_4864 0.88 -1.4
5,530,868 - PP_4864 0.88 -3.0
5,530,868 - PP_4864 0.88 -0.1
5,530,956 + -0.4
5,530,956 + -0.8
5,530,956 + -1.5
5,530,956 + -1.1
5,530,957 - -1.4
5,530,982 + -2.1
5,530,982 + -0.8
5,530,983 - +0.1
5,531,233 + PP_4865 0.20 -1.5
5,531,234 - PP_4865 0.21 -1.0
5,531,401 + PP_4865 0.33 -1.6
5,531,401 + PP_4865 0.33 -1.0
5,531,401 + PP_4865 0.33 -1.5
5,531,401 + PP_4865 0.33 -2.1
5,531,401 + PP_4865 0.33 -3.2
5,531,401 + PP_4865 0.33 -0.1
5,531,401 + PP_4865 0.33 -0.2
5,531,401 + PP_4865 0.33 -0.6
5,531,402 - PP_4865 0.33 -0.7
5,531,402 - PP_4865 0.33 -1.7
5,531,402 - +0.0
5,531,468 - PP_4865 0.38 -0.8
5,531,468 - PP_4865 0.38 -0.6
5,531,647 + PP_4865 0.52 -1.7
5,531,647 + PP_4865 0.52 +0.2
5,531,648 - PP_4865 0.52 -1.3
5,531,750 - PP_4865 0.60 -2.5
5,531,773 + PP_4865 0.62 -0.5
5,531,788 + PP_4865 0.63 -0.3
5,531,788 + PP_4865 0.63 -1.1
5,531,788 + PP_4865 0.63 -1.6
5,531,788 + PP_4865 0.63 -1.8
5,531,789 - PP_4865 0.63 -1.1
5,531,789 - PP_4865 0.63 -1.9
5,531,860 - PP_4865 0.68 +2.3
5,531,860 - PP_4865 0.68 -1.3
5,531,860 - PP_4865 0.68 -1.2
5,531,863 + PP_4865 0.69 -0.4
5,531,863 + PP_4865 0.69 -1.1
5,531,863 + PP_4865 0.69 -1.6
5,531,864 - PP_4865 0.69 -1.5
5,531,864 - PP_4865 0.69 +0.7
5,531,864 - +2.3
5,531,864 - PP_4865 0.69 -0.7
5,531,864 - PP_4865 0.69 -2.0
5,531,897 - PP_4865 0.71 -1.0
5,531,897 - PP_4865 0.71 -1.0
5,531,897 - PP_4865 0.71 -1.2
5,531,897 - PP_4865 0.71 +0.0
5,531,953 + PP_4865 0.76 -1.5
5,531,953 + PP_4865 0.76 -0.1
5,531,953 + PP_4865 0.76 -1.7
5,531,954 - PP_4865 0.76 -2.3
5,531,954 - PP_4865 0.76 -0.9

Or see this region's nucleotide sequence