Strain Fitness in Pseudomonas putida KT2440 around PP_0383

Experiment: L-Lysine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0381 and PP_0382 are separated by 140 nucleotidesPP_0382 and PP_0383 are separated by 14 nucleotidesPP_0383 and PP_0384 are separated by 253 nucleotidesPP_0384 and PP_0385 are separated by 187 nucleotides PP_0381: PP_0381 - Coenzyme PQQ synthesis protein F, at 460,164 to 462,464 _0381 PP_0382: PP_0382 - 5-aminopentanamidase, at 462,605 to 463,399 _0382 PP_0383: PP_0383 - Lysine 2-monooxygenase, at 463,414 to 465,096 _0383 PP_0384: PP_0384 - Transcriptional regulator, AsnC family, at 465,350 to 465,811 _0384 PP_0385: PP_0385 - putative serine acetyltransferase, at 465,999 to 466,553 _0385 Position (kb) 463 464 465 466Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 462.593 kb on + strandat 462.593 kb on + strandat 462.594 kb on - strandat 462.613 kb on + strandat 462.614 kb on - strandat 462.614 kb on - strandat 462.802 kb on - strand, within PP_0382at 462.802 kb on - strand, within PP_0382at 462.810 kb on + strand, within PP_0382at 462.810 kb on + strand, within PP_0382at 462.811 kb on - strand, within PP_0382at 462.812 kb on + strand, within PP_0382at 462.812 kb on + strand, within PP_0382at 462.812 kb on + strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.819 kb on + strand, within PP_0382at 462.819 kb on + strand, within PP_0382at 462.819 kb on + strand, within PP_0382at 462.820 kb on - strand, within PP_0382at 462.820 kb on - strand, within PP_0382at 462.865 kb on + strand, within PP_0382at 462.961 kb on - strand, within PP_0382at 462.961 kb on - strand, within PP_0382at 463.120 kb on - strand, within PP_0382at 463.155 kb on + strand, within PP_0382at 463.156 kb on - strand, within PP_0382at 463.156 kb on - strand, within PP_0382at 463.383 kb on + strandat 463.383 kb on + strandat 463.384 kb on - strandat 463.384 kb on - strandat 463.384 kb on - strandat 463.634 kb on + strand, within PP_0383at 463.634 kb on + strand, within PP_0383at 463.635 kb on - strand, within PP_0383at 463.635 kb on - strand, within PP_0383at 463.635 kb on - strand, within PP_0383at 463.694 kb on + strand, within PP_0383at 463.763 kb on + strand, within PP_0383at 463.795 kb on + strand, within PP_0383at 463.899 kb on - strand, within PP_0383at 463.899 kb on - strand, within PP_0383at 463.899 kb on - strand, within PP_0383at 463.899 kb on - strand, within PP_0383at 464.026 kb on - strand, within PP_0383at 464.026 kb on - strand, within PP_0383at 464.117 kb on - strand, within PP_0383at 464.126 kb on + strand, within PP_0383at 464.126 kb on + strand, within PP_0383at 464.127 kb on - strand, within PP_0383at 464.483 kb on + strand, within PP_0383at 464.543 kb on - strand, within PP_0383at 464.543 kb on - strand, within PP_0383at 464.666 kb on + strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.759 kb on + strand, within PP_0383at 464.759 kb on + strand, within PP_0383at 464.760 kb on - strand, within PP_0383at 464.765 kb on + strand, within PP_0383at 464.765 kb on + strand, within PP_0383at 464.765 kb on + strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.877 kb on - strand, within PP_0383at 464.912 kb on + strand, within PP_0383at 465.141 kb on + strandat 465.143 kb on + strandat 465.143 kb on + strandat 465.144 kb on - strandat 465.144 kb on - strandat 465.144 kb on - strandat 465.166 kb on + strandat 465.167 kb on - strandat 465.184 kb on + strandat 465.188 kb on + strandat 465.189 kb on - strandat 465.189 kb on - strandat 465.189 kb on - strandat 465.189 kb on - strandat 465.214 kb on - strandat 465.241 kb on + strandat 465.242 kb on - strandat 465.271 kb on + strandat 465.271 kb on + strandat 465.271 kb on + strandat 465.272 kb on - strandat 465.307 kb on + strandat 465.308 kb on - strandat 465.486 kb on + strand, within PP_0384at 465.486 kb on + strand, within PP_0384at 465.487 kb on - strand, within PP_0384at 465.487 kb on - strand, within PP_0384at 465.487 kb on - strandat 465.504 kb on - strand, within PP_0384at 465.591 kb on + strand, within PP_0384at 465.591 kb on + strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.632 kb on + strand, within PP_0384at 465.640 kb on - strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.650 kb on - strand, within PP_0384at 465.650 kb on - strand, within PP_0384at 465.650 kb on - strand, within PP_0384at 465.823 kb on - strandat 465.841 kb on + strandat 465.874 kb on + strandat 465.874 kb on + strandat 465.875 kb on - strandat 465.875 kb on - strandat 465.875 kb on - strandat 466.067 kb on + strand, within PP_0385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
remove
462,593 + +0.4
462,593 + +0.2
462,594 - +0.1
462,613 + +0.1
462,614 - -0.5
462,614 - +0.0
462,802 - PP_0382 0.25 -1.2
462,802 - PP_0382 0.25 -0.2
462,810 + PP_0382 0.26 -0.6
462,810 + PP_0382 0.26 -1.8
462,811 - PP_0382 0.26 -1.7
462,812 + PP_0382 0.26 -1.6
462,812 + PP_0382 0.26 -1.4
462,812 + PP_0382 0.26 -2.2
462,813 - PP_0382 0.26 -1.2
462,813 - PP_0382 0.26 -1.0
462,813 - PP_0382 0.26 -1.1
462,813 - PP_0382 0.26 -1.7
462,813 - PP_0382 0.26 -1.5
462,813 - PP_0382 0.26 -0.7
462,819 + PP_0382 0.27 -0.8
462,819 + PP_0382 0.27 -0.4
462,819 + PP_0382 0.27 -2.4
462,820 - PP_0382 0.27 -1.0
462,820 - PP_0382 0.27 -0.5
462,865 + PP_0382 0.33 +1.1
462,961 - PP_0382 0.45 -0.2
462,961 - PP_0382 0.45 -1.9
463,120 - PP_0382 0.65 -1.1
463,155 + PP_0382 0.69 -1.5
463,156 - PP_0382 0.69 -1.1
463,156 - PP_0382 0.69 -1.0
463,383 + -0.8
463,383 + -0.9
463,384 - -0.7
463,384 - -0.4
463,384 - -1.4
463,634 + PP_0383 0.13 -0.7
463,634 + PP_0383 0.13 -4.2
463,635 - PP_0383 0.13 -4.2
463,635 - PP_0383 0.13 -2.4
463,635 - PP_0383 0.13 -2.0
463,694 + PP_0383 0.17 -2.5
463,763 + PP_0383 0.21 -3.6
463,795 + PP_0383 0.23 -4.7
463,899 - PP_0383 0.29 -2.1
463,899 - PP_0383 0.29 -2.8
463,899 - PP_0383 0.29 -3.1
463,899 - PP_0383 0.29 -1.3
464,026 - PP_0383 0.36 -2.0
464,026 - PP_0383 0.36 -2.5
464,117 - PP_0383 0.42 -2.3
464,126 + PP_0383 0.42 -2.6
464,126 + PP_0383 0.42 -1.4
464,127 - PP_0383 0.42 -2.6
464,483 + PP_0383 0.64 -2.4
464,543 - PP_0383 0.67 -2.4
464,543 - PP_0383 0.67 -2.2
464,666 + PP_0383 0.74 -2.9
464,667 - PP_0383 0.74 -2.1
464,667 - PP_0383 0.74 -1.6
464,667 - PP_0383 0.74 -3.5
464,667 - PP_0383 0.74 -2.6
464,667 - PP_0383 0.74 -3.1
464,667 - PP_0383 0.74 -2.5
464,759 + PP_0383 0.80 -2.3
464,759 + PP_0383 0.80 -1.5
464,760 - PP_0383 0.80 -3.8
464,765 + PP_0383 0.80 -3.6
464,765 + PP_0383 0.80 -1.0
464,765 + PP_0383 0.80 -4.1
464,766 - PP_0383 0.80 -2.5
464,766 - PP_0383 0.80 +0.4
464,766 - PP_0383 0.80 -3.3
464,766 - PP_0383 0.80 -1.9
464,766 - PP_0383 0.80 -2.4
464,877 - PP_0383 0.87 -3.0
464,912 + PP_0383 0.89 -2.3
465,141 + -2.6
465,143 + -3.4
465,143 + -1.0
465,144 - -0.5
465,144 - -0.3
465,144 - -1.0
465,166 + +0.2
465,167 - -2.4
465,184 + -2.1
465,188 + -2.6
465,189 - -2.4
465,189 - -2.4
465,189 - -1.5
465,189 - -1.8
465,214 - -2.7
465,241 + -5.1
465,242 - -1.2
465,271 + -3.3
465,271 + -2.4
465,271 + -3.5
465,272 - -0.7
465,307 + -2.0
465,308 - -1.0
465,486 + PP_0384 0.29 -3.1
465,486 + PP_0384 0.29 -3.0
465,487 - PP_0384 0.30 -3.0
465,487 - PP_0384 0.30 -3.5
465,487 - -0.5
465,504 - PP_0384 0.33 -1.2
465,591 + PP_0384 0.52 -3.4
465,591 + PP_0384 0.52 -1.4
465,592 - PP_0384 0.52 -2.6
465,592 - PP_0384 0.52 -3.7
465,592 - PP_0384 0.52 -3.3
465,592 - PP_0384 0.52 -3.0
465,632 + PP_0384 0.61 -1.9
465,640 - PP_0384 0.63 -2.5
465,649 + PP_0384 0.65 -2.2
465,649 + PP_0384 0.65 -2.0
465,649 + PP_0384 0.65 -3.9
465,649 + PP_0384 0.65 -3.8
465,650 - PP_0384 0.65 -2.8
465,650 - PP_0384 0.65 -3.4
465,650 - PP_0384 0.65 -1.3
465,823 - +0.2
465,841 + -4.5
465,874 + -0.1
465,874 + +0.2
465,875 - -0.5
465,875 - +0.8
465,875 - -0.5
466,067 + PP_0385 0.12 +0.1

Or see this region's nucleotide sequence