Strain Fitness in Pseudomonas putida KT2440 around PP_4595

Experiment: L-Cysteine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4594 and PP_4595 are separated by 59 nucleotidesPP_4595 and PP_4596 are separated by 109 nucleotides PP_4594: PP_4594 - putative Cystathionine gamma-synthase, at 5,212,530 to 5,213,711 _4594 PP_4595: PP_4595 - putative LRP-like transcriptional regulator, at 5,213,771 to 5,214,265 _4595 PP_4596: PP_4596 - putative oxidoreductase, at 5,214,375 to 5,216,705 _4596 Position (kb) 5213 5214 5215Strain fitness (log2 ratio) -2 -1 0 1at 5212.779 kb on + strand, within PP_4594at 5212.864 kb on + strand, within PP_4594at 5212.864 kb on + strand, within PP_4594at 5212.865 kb on - strand, within PP_4594at 5212.865 kb on - strand, within PP_4594at 5212.865 kb on - strand, within PP_4594at 5212.865 kb on - strand, within PP_4594at 5212.976 kb on - strand, within PP_4594at 5212.976 kb on - strand, within PP_4594at 5213.095 kb on + strand, within PP_4594at 5213.096 kb on - strand, within PP_4594at 5213.096 kb on - strand, within PP_4594at 5213.096 kb on - strand, within PP_4594at 5213.096 kb on - strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.329 kb on + strand, within PP_4594at 5213.330 kb on - strand, within PP_4594at 5213.330 kb on - strand, within PP_4594at 5213.330 kb on - strand, within PP_4594at 5213.330 kb on - strand, within PP_4594at 5213.392 kb on + strand, within PP_4594at 5213.522 kb on - strand, within PP_4594at 5213.522 kb on - strand, within PP_4594at 5213.554 kb on + strand, within PP_4594at 5213.555 kb on - strand, within PP_4594at 5213.571 kb on - strand, within PP_4594at 5213.667 kb on - strandat 5213.733 kb on + strandat 5213.733 kb on + strandat 5213.733 kb on + strandat 5213.777 kb on + strandat 5213.803 kb on + strandat 5213.838 kb on + strand, within PP_4595at 5213.939 kb on + strand, within PP_4595at 5213.939 kb on + strand, within PP_4595at 5213.939 kb on + strand, within PP_4595at 5213.940 kb on - strand, within PP_4595at 5213.940 kb on - strand, within PP_4595at 5214.089 kb on + strand, within PP_4595at 5214.089 kb on + strand, within PP_4595at 5214.113 kb on + strand, within PP_4595at 5214.113 kb on + strand, within PP_4595at 5214.113 kb on + strand, within PP_4595at 5214.113 kb on + strand, within PP_4595at 5214.114 kb on - strand, within PP_4595at 5214.114 kb on - strand, within PP_4595at 5214.139 kb on + strand, within PP_4595at 5214.139 kb on + strand, within PP_4595at 5214.139 kb on + strand, within PP_4595at 5214.140 kb on - strand, within PP_4595at 5214.149 kb on + strand, within PP_4595at 5214.150 kb on - strand, within PP_4595at 5214.150 kb on - strand, within PP_4595at 5214.162 kb on - strand, within PP_4595at 5214.176 kb on - strand, within PP_4595at 5214.234 kb on - strandat 5214.234 kb on - strandat 5214.332 kb on + strandat 5214.332 kb on + strandat 5214.333 kb on - strandat 5214.333 kb on - strandat 5214.333 kb on - strandat 5214.458 kb on + strandat 5214.459 kb on - strandat 5214.459 kb on - strandat 5214.460 kb on + strandat 5214.460 kb on + strandat 5214.460 kb on + strandat 5214.461 kb on - strandat 5214.461 kb on - strandat 5214.461 kb on - strandat 5214.461 kb on - strandat 5214.475 kb on + strandat 5214.475 kb on + strandat 5214.475 kb on + strandat 5214.514 kb on + strandat 5214.515 kb on - strandat 5214.515 kb on - strandat 5214.515 kb on - strandat 5214.545 kb on - strandat 5214.545 kb on - strandat 5214.712 kb on + strandat 5214.712 kb on + strand, within PP_4596at 5214.713 kb on - strand, within PP_4596at 5214.713 kb on - strand, within PP_4596at 5214.727 kb on + strand, within PP_4596at 5214.727 kb on + strand, within PP_4596at 5214.728 kb on - strand, within PP_4596at 5214.728 kb on - strand, within PP_4596at 5214.728 kb on - strand, within PP_4596at 5214.786 kb on + strand, within PP_4596at 5214.786 kb on + strand, within PP_4596at 5214.970 kb on + strand, within PP_4596at 5214.971 kb on - strand, within PP_4596at 5214.971 kb on - strand, within PP_4596at 5214.971 kb on - strand, within PP_4596at 5214.986 kb on - strand, within PP_4596at 5215.058 kb on + strand, within PP_4596at 5215.058 kb on + strand, within PP_4596at 5215.059 kb on - strand, within PP_4596

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Cysteine (N)
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5,212,779 + PP_4594 0.21 +0.4
5,212,864 + PP_4594 0.28 +0.9
5,212,864 + PP_4594 0.28 +0.3
5,212,865 - PP_4594 0.28 +0.1
5,212,865 - PP_4594 0.28 +0.2
5,212,865 - PP_4594 0.28 -0.6
5,212,865 - PP_4594 0.28 +0.2
5,212,976 - PP_4594 0.38 -0.6
5,212,976 - PP_4594 0.38 -0.5
5,213,095 + PP_4594 0.48 -0.1
5,213,096 - PP_4594 0.48 +0.3
5,213,096 - PP_4594 0.48 +0.6
5,213,096 - PP_4594 0.48 +0.0
5,213,096 - PP_4594 0.48 -0.4
5,213,329 + PP_4594 0.68 +0.4
5,213,329 + PP_4594 0.68 -0.6
5,213,329 + PP_4594 0.68 -0.1
5,213,329 + PP_4594 0.68 -0.9
5,213,329 + PP_4594 0.68 -0.1
5,213,329 + PP_4594 0.68 -0.2
5,213,329 + PP_4594 0.68 +0.4
5,213,330 - PP_4594 0.68 -0.6
5,213,330 - PP_4594 0.68 -0.2
5,213,330 - PP_4594 0.68 -2.4
5,213,330 - PP_4594 0.68 -2.0
5,213,392 + PP_4594 0.73 +0.8
5,213,522 - PP_4594 0.84 -0.2
5,213,522 - PP_4594 0.84 +0.7
5,213,554 + PP_4594 0.87 +0.6
5,213,555 - PP_4594 0.87 -0.2
5,213,571 - PP_4594 0.88 +0.2
5,213,667 - -0.8
5,213,733 + -0.4
5,213,733 + +0.0
5,213,733 + -0.7
5,213,777 + -1.3
5,213,803 + -1.2
5,213,838 + PP_4595 0.14 -2.3
5,213,939 + PP_4595 0.34 -1.2
5,213,939 + PP_4595 0.34 -2.2
5,213,939 + PP_4595 0.34 -1.1
5,213,940 - PP_4595 0.34 -1.0
5,213,940 - PP_4595 0.34 -1.2
5,214,089 + PP_4595 0.64 -2.0
5,214,089 + PP_4595 0.64 -0.2
5,214,113 + PP_4595 0.69 -0.7
5,214,113 + PP_4595 0.69 -1.4
5,214,113 + PP_4595 0.69 -1.3
5,214,113 + PP_4595 0.69 -1.0
5,214,114 - PP_4595 0.69 -1.8
5,214,114 - PP_4595 0.69 -2.3
5,214,139 + PP_4595 0.74 -0.4
5,214,139 + PP_4595 0.74 -0.6
5,214,139 + PP_4595 0.74 -1.4
5,214,140 - PP_4595 0.75 +0.1
5,214,149 + PP_4595 0.76 -0.4
5,214,150 - PP_4595 0.77 -2.4
5,214,150 - PP_4595 0.77 -1.9
5,214,162 - PP_4595 0.79 -1.5
5,214,176 - PP_4595 0.82 -2.2
5,214,234 - -0.9
5,214,234 - -1.3
5,214,332 + +0.4
5,214,332 + +0.7
5,214,333 - +0.3
5,214,333 - -0.8
5,214,333 - +0.1
5,214,458 + +0.2
5,214,459 - -0.0
5,214,459 - +0.1
5,214,460 + +0.2
5,214,460 + +0.2
5,214,460 + +0.8
5,214,461 - +0.4
5,214,461 - +0.2
5,214,461 - -0.3
5,214,461 - -0.8
5,214,475 + -0.4
5,214,475 + +0.2
5,214,475 + +0.3
5,214,514 + +0.4
5,214,515 - -0.8
5,214,515 - -0.2
5,214,515 - +0.4
5,214,545 - -0.6
5,214,545 - -0.2
5,214,712 + +0.1
5,214,712 + PP_4596 0.14 -0.7
5,214,713 - PP_4596 0.15 +0.5
5,214,713 - PP_4596 0.15 +0.2
5,214,727 + PP_4596 0.15 +0.2
5,214,727 + PP_4596 0.15 +0.7
5,214,728 - PP_4596 0.15 -0.5
5,214,728 - PP_4596 0.15 +0.0
5,214,728 - PP_4596 0.15 -0.3
5,214,786 + PP_4596 0.18 -0.2
5,214,786 + PP_4596 0.18 +0.0
5,214,970 + PP_4596 0.26 -0.9
5,214,971 - PP_4596 0.26 +0.5
5,214,971 - PP_4596 0.26 -0.0
5,214,971 - PP_4596 0.26 -0.9
5,214,986 - PP_4596 0.26 -0.3
5,215,058 + PP_4596 0.29 +0.9
5,215,058 + PP_4596 0.29 +0.5
5,215,059 - PP_4596 0.29 -0.0

Or see this region's nucleotide sequence