Experiment: L-Cysteine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0840 and PP_0841 are separated by 179 nucleotides PP_0841 and PP_0842 are separated by 45 nucleotides PP_0842 and PP_0843 are separated by 46 nucleotides PP_0843 and PP_0844 are separated by 28 nucleotides PP_0844 and PP_0845 are separated by 8 nucleotides
PP_0840: PP_0840 - serine acetyltransferase, at 977,049 to 977,834
_0840
PP_0841: PP_0841 - DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR, at 978,014 to 978,505
_0841
PP_0842: PP_0842 - cysteine desulfurase, at 978,551 to 979,765
_0842
PP_0843: PP_0843 - scaffold protein involved in iron-sulfur cluster assembly, at 979,812 to 980,198
_0843
PP_0844: PP_0844 - iron-sulfur cluster assembly protein, copper(I) binding, at 980,227 to 980,550
_0844
PP_0845: PP_0845 - DnaJ-like molecular chaperone specific for IscU, at 980,559 to 981,080
_0845
Position (kb) 978
979
980 Strain fitness (log2 ratio) -1
0
1
2
3 at 977.588 kb on + strand, within PP_0840 at 977.622 kb on + strand, within PP_0840 at 977.714 kb on + strand, within PP_0840 at 977.715 kb on - strand, within PP_0840 at 977.715 kb on - strand, within PP_0840 at 977.715 kb on - strand, within PP_0840 at 977.715 kb on - strand, within PP_0840 at 977.748 kb on + strand, within PP_0840 at 977.748 kb on + strand, within PP_0840 at 977.749 kb on - strand, within PP_0840 at 977.749 kb on - strand, within PP_0840 at 977.749 kb on - strand, within PP_0840 at 977.749 kb on - strand, within PP_0840 at 978.009 kb on + strand at 978.206 kb on + strand, within PP_0841 at 978.384 kb on + strand, within PP_0841 at 978.384 kb on + strand, within PP_0841 at 978.384 kb on + strand, within PP_0841 at 978.384 kb on + strand, within PP_0841 at 978.384 kb on + strand, within PP_0841 at 978.539 kb on + strand at 978.539 kb on + strand at 980.196 kb on + strand at 980.215 kb on + strand at 980.215 kb on + strand at 980.215 kb on + strand at 980.564 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Cysteine (N) remove 977,588 + PP_0840 0.69 +3.3 977,622 + PP_0840 0.73 +0.1 977,714 + PP_0840 0.85 +0.3 977,715 - PP_0840 0.85 +0.6 977,715 - PP_0840 0.85 +0.0 977,715 - PP_0840 0.85 +0.1 977,715 - PP_0840 0.85 +0.2 977,748 + PP_0840 0.89 -0.1 977,748 + PP_0840 0.89 +0.1 977,749 - PP_0840 0.89 +1.0 977,749 - PP_0840 0.89 +0.2 977,749 - PP_0840 0.89 -0.4 977,749 - PP_0840 0.89 +0.5 978,009 + +1.1 978,206 + PP_0841 0.39 +0.7 978,384 + PP_0841 0.75 -1.2 978,384 + PP_0841 0.75 +0.5 978,384 + PP_0841 0.75 -0.2 978,384 + PP_0841 0.75 +0.0 978,384 + PP_0841 0.75 +0.2 978,539 + -0.2 978,539 + -0.5 980,196 + -0.0 980,215 + -1.0 980,215 + -0.4 980,215 + +0.5 980,564 + -0.1
Or see this region's nucleotide sequence