Strain Fitness in Pseudomonas putida KT2440 around PP_3777

Experiment: L-Ornithine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_3775 and PP_3776 overlap by 8 nucleotidesPP_3776 and PP_3777 are separated by 5 nucleotidesPP_3777 and PP_3778 are separated by 17 nucleotides PP_3775: PP_3775 - putative sarcosine oxidase, at 4,303,154 to 4,304,302 _3775 PP_3776: PP_3776 - putative permease (RarD protein), at 4,304,295 to 4,305,209 _3776 PP_3777: PP_3777 - conserved protein of unknown function, at 4,305,215 to 4,306,054 _3777 PP_3778: PP_3778 - Pyrroline-5-carboxylate reductase, at 4,306,072 to 4,306,866 _3778 Position (kb) 4305 4306 4307Strain fitness (log2 ratio) -3 -2 -1 0 1at 4304.289 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.296 kb on + strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.297 kb on - strandat 4304.336 kb on + strandat 4304.337 kb on - strandat 4304.355 kb on + strandat 4304.355 kb on + strandat 4304.415 kb on + strand, within PP_3776at 4304.415 kb on + strand, within PP_3776at 4304.416 kb on - strand, within PP_3776at 4304.416 kb on - strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.425 kb on + strand, within PP_3776at 4304.426 kb on - strand, within PP_3776at 4304.426 kb on - strand, within PP_3776at 4304.426 kb on - strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.713 kb on + strand, within PP_3776at 4304.714 kb on - strand, within PP_3776at 4304.714 kb on - strand, within PP_3776at 4304.714 kb on - strand, within PP_3776at 4304.782 kb on + strand, within PP_3776at 4304.800 kb on - strand, within PP_3776at 4304.800 kb on - strand, within PP_3776at 4304.800 kb on - strand, within PP_3776at 4304.891 kb on - strand, within PP_3776at 4304.935 kb on - strand, within PP_3776at 4304.935 kb on - strand, within PP_3776at 4305.024 kb on + strand, within PP_3776at 4305.025 kb on - strand, within PP_3776at 4305.128 kb on - strandat 4305.128 kb on - strandat 4305.174 kb on + strandat 4305.255 kb on + strandat 4305.256 kb on - strandat 4305.367 kb on + strand, within PP_3777at 4305.367 kb on + strand, within PP_3777at 4305.367 kb on + strand, within PP_3777at 4305.367 kb on + strand, within PP_3777at 4305.368 kb on - strand, within PP_3777at 4305.368 kb on - strand, within PP_3777at 4305.369 kb on + strandat 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.369 kb on + strand, within PP_3777at 4305.370 kb on - strand, within PP_3777at 4305.370 kb on - strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.371 kb on + strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.372 kb on - strand, within PP_3777at 4305.441 kb on + strand, within PP_3777at 4305.441 kb on + strand, within PP_3777at 4305.441 kb on + strand, within PP_3777at 4305.442 kb on - strand, within PP_3777at 4305.562 kb on - strand, within PP_3777at 4305.562 kb on - strand, within PP_3777at 4305.562 kb on - strand, within PP_3777at 4305.608 kb on + strand, within PP_3777at 4305.608 kb on + strand, within PP_3777at 4305.659 kb on + strand, within PP_3777at 4305.672 kb on + strand, within PP_3777at 4305.672 kb on + strand, within PP_3777at 4305.806 kb on - strand, within PP_3777at 4305.806 kb on - strand, within PP_3777at 4305.818 kb on + strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.819 kb on - strand, within PP_3777at 4305.833 kb on + strand, within PP_3777at 4305.905 kb on - strand, within PP_3777at 4305.973 kb on + strandat 4305.997 kb on - strandat 4306.003 kb on + strandat 4306.003 kb on + strandat 4306.004 kb on - strandat 4306.006 kb on - strandat 4306.006 kb on - strandat 4306.045 kb on + strandat 4306.045 kb on + strandat 4306.045 kb on + strandat 4306.045 kb on + strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.046 kb on - strandat 4306.161 kb on + strand, within PP_3778at 4306.258 kb on + strand, within PP_3778at 4306.481 kb on + strand, within PP_3778at 4306.482 kb on - strand, within PP_3778at 4306.482 kb on - strand, within PP_3778at 4306.482 kb on - strand, within PP_3778at 4306.482 kb on - strand, within PP_3778at 4306.484 kb on + strand, within PP_3778at 4306.484 kb on + strand, within PP_3778at 4306.484 kb on + strand, within PP_3778at 4306.485 kb on - strand, within PP_3778at 4306.485 kb on - strand, within PP_3778at 4306.519 kb on - strand, within PP_3778at 4306.519 kb on - strand, within PP_3778at 4306.519 kb on - strand, within PP_3778at 4306.552 kb on + strand, within PP_3778at 4306.553 kb on - strand, within PP_3778at 4306.853 kb on + strandat 4306.853 kb on + strandat 4306.868 kb on + strandat 4306.868 kb on + strandat 4306.868 kb on + strandat 4306.868 kb on + strandat 4306.880 kb on - strandat 4306.900 kb on + strandat 4306.956 kb on + strandat 4306.957 kb on - strandat 4306.957 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine (N)
remove
4,304,289 + +0.2
4,304,296 + -0.1
4,304,296 + +0.3
4,304,296 + +0.2
4,304,296 + +0.2
4,304,296 + +0.5
4,304,296 + +0.6
4,304,296 + -0.1
4,304,296 + +0.2
4,304,296 + +0.0
4,304,296 + -0.5
4,304,296 + +0.3
4,304,296 + +0.4
4,304,296 + +0.7
4,304,297 - +0.3
4,304,297 - +0.8
4,304,297 - +0.6
4,304,297 - +0.2
4,304,297 - +0.5
4,304,297 - +0.2
4,304,297 - +0.5
4,304,297 - +0.3
4,304,336 + -0.4
4,304,337 - +0.2
4,304,355 + -1.0
4,304,355 + -0.7
4,304,415 + PP_3776 0.13 -0.6
4,304,415 + PP_3776 0.13 -0.8
4,304,416 - PP_3776 0.13 -1.7
4,304,416 - PP_3776 0.13 -0.9
4,304,425 + PP_3776 0.14 -0.4
4,304,425 + PP_3776 0.14 -1.6
4,304,425 + PP_3776 0.14 -0.5
4,304,425 + PP_3776 0.14 -1.5
4,304,425 + PP_3776 0.14 -1.5
4,304,426 - PP_3776 0.14 -1.8
4,304,426 - PP_3776 0.14 -1.1
4,304,426 - PP_3776 0.14 -3.3
4,304,713 + PP_3776 0.46 -1.2
4,304,713 + PP_3776 0.46 -2.1
4,304,713 + PP_3776 0.46 +0.5
4,304,713 + PP_3776 0.46 -0.9
4,304,713 + PP_3776 0.46 -1.4
4,304,714 - PP_3776 0.46 -1.9
4,304,714 - PP_3776 0.46 -2.4
4,304,714 - PP_3776 0.46 -0.7
4,304,782 + PP_3776 0.53 -1.1
4,304,800 - PP_3776 0.55 -2.5
4,304,800 - PP_3776 0.55 -2.2
4,304,800 - PP_3776 0.55 -1.3
4,304,891 - PP_3776 0.65 -1.0
4,304,935 - PP_3776 0.70 -1.9
4,304,935 - PP_3776 0.70 -2.6
4,305,024 + PP_3776 0.80 -1.2
4,305,025 - PP_3776 0.80 -2.1
4,305,128 - -1.7
4,305,128 - -1.2
4,305,174 + -0.9
4,305,255 + -2.3
4,305,256 - +0.4
4,305,367 + PP_3777 0.18 -1.4
4,305,367 + PP_3777 0.18 -0.9
4,305,367 + PP_3777 0.18 -0.7
4,305,367 + PP_3777 0.18 -0.8
4,305,368 - PP_3777 0.18 +0.3
4,305,368 - PP_3777 0.18 +0.3
4,305,369 + +0.2
4,305,369 + PP_3777 0.18 -1.1
4,305,369 + PP_3777 0.18 -0.8
4,305,369 + PP_3777 0.18 +0.8
4,305,369 + PP_3777 0.18 -0.9
4,305,369 + PP_3777 0.18 -1.0
4,305,369 + PP_3777 0.18 -0.9
4,305,369 + PP_3777 0.18 -0.6
4,305,370 - PP_3777 0.18 +0.7
4,305,370 - PP_3777 0.18 +0.3
4,305,371 + PP_3777 0.19 -2.3
4,305,371 + PP_3777 0.19 -1.3
4,305,371 + PP_3777 0.19 -1.2
4,305,371 + PP_3777 0.19 -0.4
4,305,371 + PP_3777 0.19 -0.1
4,305,372 - PP_3777 0.19 -0.0
4,305,372 - PP_3777 0.19 +0.1
4,305,372 - PP_3777 0.19 +0.2
4,305,372 - PP_3777 0.19 +0.3
4,305,372 - PP_3777 0.19 +0.0
4,305,441 + PP_3777 0.27 -0.9
4,305,441 + PP_3777 0.27 -0.6
4,305,441 + PP_3777 0.27 -1.4
4,305,442 - PP_3777 0.27 +1.0
4,305,562 - PP_3777 0.41 -0.4
4,305,562 - PP_3777 0.41 +0.9
4,305,562 - PP_3777 0.41 +0.6
4,305,608 + PP_3777 0.47 -1.2
4,305,608 + PP_3777 0.47 -1.7
4,305,659 + PP_3777 0.53 -0.8
4,305,672 + PP_3777 0.54 -1.1
4,305,672 + PP_3777 0.54 -2.0
4,305,806 - PP_3777 0.70 -0.1
4,305,806 - PP_3777 0.70 -0.7
4,305,818 + PP_3777 0.72 -1.4
4,305,819 - PP_3777 0.72 +0.9
4,305,819 - PP_3777 0.72 -0.3
4,305,819 - PP_3777 0.72 +0.5
4,305,819 - PP_3777 0.72 -0.0
4,305,833 + PP_3777 0.74 -1.3
4,305,905 - PP_3777 0.82 -0.1
4,305,973 + -0.9
4,305,997 - -0.2
4,306,003 + -1.8
4,306,003 + -0.0
4,306,004 - -0.1
4,306,006 - +0.1
4,306,006 - +0.3
4,306,045 + -1.4
4,306,045 + -1.6
4,306,045 + -1.4
4,306,045 + -1.7
4,306,046 - +0.1
4,306,046 - -0.0
4,306,046 - -0.9
4,306,046 - -0.2
4,306,046 - -0.9
4,306,046 - -0.3
4,306,046 - -0.3
4,306,161 + PP_3778 0.11 -0.6
4,306,258 + PP_3778 0.23 -1.3
4,306,481 + PP_3778 0.51 -1.8
4,306,482 - PP_3778 0.52 -1.2
4,306,482 - PP_3778 0.52 +0.6
4,306,482 - PP_3778 0.52 +0.0
4,306,482 - PP_3778 0.52 +0.1
4,306,484 + PP_3778 0.52 -0.7
4,306,484 + PP_3778 0.52 -1.9
4,306,484 + PP_3778 0.52 -1.2
4,306,485 - PP_3778 0.52 +0.8
4,306,485 - PP_3778 0.52 +0.0
4,306,519 - PP_3778 0.56 +0.1
4,306,519 - PP_3778 0.56 +0.9
4,306,519 - PP_3778 0.56 +0.2
4,306,552 + PP_3778 0.60 -0.8
4,306,553 - PP_3778 0.61 +0.2
4,306,853 + -1.5
4,306,853 + -0.8
4,306,868 + -1.3
4,306,868 + -0.9
4,306,868 + -2.1
4,306,868 + -1.3
4,306,880 - +0.4
4,306,900 + -1.2
4,306,956 + -1.0
4,306,957 - +0.0
4,306,957 - +0.0

Or see this region's nucleotide sequence