Strain Fitness in Pseudomonas putida KT2440 around PP_0084

Experiment: L-Ornithine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0083 and PP_0084 are separated by 110 nucleotidesPP_0084 and PP_0085 overlap by 4 nucleotidesPP_0085 and PP_0086 overlap by 15 nucleotidesPP_0086 and PP_0087 are separated by 58 nucleotides PP_0083: PP_0083 - tryptophan synthase beta chain, at 92,376 to 93,593 _0083 PP_0084: PP_0084 - HTH-type transcriptional regulator TrpI, at 93,704 to 94,600 _0084 PP_0085: PP_0085 - conserved protein of unknown function, at 94,597 to 95,085 _0085 PP_0086: PP_0086 - conserved protein of unknown function, at 95,071 to 95,286 _0086 PP_0087: PP_0087 - conserved exported protein of unknown function, at 95,345 to 95,608 _0087 Position (kb) 93 94 95Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 92.716 kb on + strand, within PP_0083at 92.717 kb on - strand, within PP_0083at 92.717 kb on - strand, within PP_0083at 92.717 kb on - strand, within PP_0083at 92.717 kb on - strand, within PP_0083at 92.745 kb on + strand, within PP_0083at 92.785 kb on - strand, within PP_0083at 92.785 kb on - strand, within PP_0083at 93.013 kb on + strand, within PP_0083at 93.014 kb on - strand, within PP_0083at 93.014 kb on - strand, within PP_0083at 93.172 kb on + strand, within PP_0083at 93.172 kb on + strand, within PP_0083at 93.173 kb on - strand, within PP_0083at 93.173 kb on - strand, within PP_0083at 93.173 kb on - strand, within PP_0083at 93.394 kb on + strand, within PP_0083at 93.394 kb on + strandat 93.434 kb on - strand, within PP_0083at 93.526 kb on + strandat 93.526 kb on + strandat 93.577 kb on + strandat 93.610 kb on + strandat 93.611 kb on - strandat 93.631 kb on + strandat 93.631 kb on + strandat 93.631 kb on + strandat 93.631 kb on + strandat 93.632 kb on - strandat 93.636 kb on + strandat 94.031 kb on - strand, within PP_0084at 94.142 kb on + strand, within PP_0084at 94.142 kb on + strand, within PP_0084at 94.143 kb on - strand, within PP_0084at 94.143 kb on - strand, within PP_0084at 94.358 kb on + strand, within PP_0084at 94.358 kb on + strand, within PP_0084at 94.358 kb on + strand, within PP_0084at 94.382 kb on + strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.383 kb on - strand, within PP_0084at 94.385 kb on + strand, within PP_0084at 94.386 kb on - strand, within PP_0084at 94.386 kb on - strand, within PP_0084at 94.386 kb on - strand, within PP_0084at 94.386 kb on - strand, within PP_0084at 94.495 kb on + strand, within PP_0084at 94.496 kb on - strand, within PP_0084at 94.599 kb on - strandat 94.612 kb on + strandat 94.613 kb on - strandat 94.619 kb on + strandat 94.667 kb on + strand, within PP_0085at 94.667 kb on + strand, within PP_0085at 94.667 kb on + strand, within PP_0085at 94.667 kb on + strand, within PP_0085at 94.668 kb on - strand, within PP_0085at 94.668 kb on - strand, within PP_0085at 94.736 kb on + strand, within PP_0085at 94.737 kb on - strand, within PP_0085at 94.750 kb on + strand, within PP_0085at 94.900 kb on - strand, within PP_0085at 94.900 kb on - strand, within PP_0085at 94.939 kb on + strand, within PP_0085at 94.940 kb on - strand, within PP_0085at 94.940 kb on - strand, within PP_0085at 95.016 kb on + strand, within PP_0085at 95.017 kb on - strand, within PP_0085at 95.035 kb on + strand, within PP_0085at 95.036 kb on - strand, within PP_0085at 95.089 kb on + strandat 95.090 kb on - strandat 95.142 kb on + strand, within PP_0086at 95.142 kb on + strand, within PP_0086at 95.142 kb on + strand, within PP_0086at 95.280 kb on + strandat 95.280 kb on + strandat 95.280 kb on + strandat 95.302 kb on + strandat 95.303 kb on - strandat 95.303 kb on - strandat 95.303 kb on - strandat 95.303 kb on - strandat 95.303 kb on - strandat 95.323 kb on + strandat 95.324 kb on - strandat 95.514 kb on - strand, within PP_0087at 95.563 kb on + strand, within PP_0087at 95.563 kb on + strand, within PP_0087at 95.564 kb on - strand, within PP_0087

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Ornithine (N)
remove
92,716 + PP_0083 0.28 -2.8
92,717 - PP_0083 0.28 -2.1
92,717 - PP_0083 0.28 -2.1
92,717 - PP_0083 0.28 -2.5
92,717 - PP_0083 0.28 -4.9
92,745 + PP_0083 0.30 -2.6
92,785 - PP_0083 0.34 -5.2
92,785 - PP_0083 0.34 -3.1
93,013 + PP_0083 0.52 -3.2
93,014 - PP_0083 0.52 -3.9
93,014 - PP_0083 0.52 -3.9
93,172 + PP_0083 0.65 -1.1
93,172 + PP_0083 0.65 -2.1
93,173 - PP_0083 0.65 -4.2
93,173 - PP_0083 0.65 -1.4
93,173 - PP_0083 0.65 -2.8
93,394 + PP_0083 0.84 -3.0
93,394 + -1.4
93,434 - PP_0083 0.87 -3.8
93,526 + -2.7
93,526 + -2.6
93,577 + -3.4
93,610 + +0.4
93,611 - -0.8
93,631 + -2.5
93,631 + -3.0
93,631 + -1.1
93,631 + -2.6
93,632 - +0.3
93,636 + -4.2
94,031 - PP_0084 0.36 +0.8
94,142 + PP_0084 0.49 +0.1
94,142 + PP_0084 0.49 +0.3
94,143 - PP_0084 0.49 -0.2
94,143 - PP_0084 0.49 +0.4
94,358 + PP_0084 0.73 +0.1
94,358 + PP_0084 0.73 +0.0
94,358 + PP_0084 0.73 +0.3
94,382 + PP_0084 0.76 +0.5
94,383 - PP_0084 0.76 +0.2
94,383 - PP_0084 0.76 +0.1
94,383 - PP_0084 0.76 -0.5
94,383 - PP_0084 0.76 -0.2
94,383 - PP_0084 0.76 +0.3
94,383 - PP_0084 0.76 -0.2
94,385 + PP_0084 0.76 -1.6
94,386 - PP_0084 0.76 -0.4
94,386 - PP_0084 0.76 +1.0
94,386 - PP_0084 0.76 +0.0
94,386 - PP_0084 0.76 +0.1
94,495 + PP_0084 0.88 +0.1
94,496 - PP_0084 0.88 -0.8
94,599 - +0.1
94,612 + +0.3
94,613 - -0.4
94,619 + +0.4
94,667 + PP_0085 0.14 -0.5
94,667 + PP_0085 0.14 -0.4
94,667 + PP_0085 0.14 +0.6
94,667 + PP_0085 0.14 -0.1
94,668 - PP_0085 0.15 -1.9
94,668 - PP_0085 0.15 +0.0
94,736 + PP_0085 0.28 +0.9
94,737 - PP_0085 0.29 +0.1
94,750 + PP_0085 0.31 -0.9
94,900 - PP_0085 0.62 +0.2
94,900 - PP_0085 0.62 -1.1
94,939 + PP_0085 0.70 -0.5
94,940 - PP_0085 0.70 +1.5
94,940 - PP_0085 0.70 -0.7
95,016 + PP_0085 0.86 -0.4
95,017 - PP_0085 0.86 -0.4
95,035 + PP_0085 0.90 -0.4
95,036 - PP_0085 0.90 +0.3
95,089 + +0.1
95,090 - +0.2
95,142 + PP_0086 0.33 +0.6
95,142 + PP_0086 0.33 +0.1
95,142 + PP_0086 0.33 +0.0
95,280 + +0.2
95,280 + -0.7
95,280 + +1.2
95,302 + -0.4
95,303 - -0.4
95,303 - +0.4
95,303 - -0.1
95,303 - -0.3
95,303 - -0.3
95,323 + -0.5
95,324 - +0.4
95,514 - PP_0087 0.64 +0.0
95,563 + PP_0087 0.83 +0.0
95,563 + PP_0087 0.83 -1.0
95,564 - PP_0087 0.83 +0.1

Or see this region's nucleotide sequence