Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0259 and PP_0260 are separated by 64 nucleotides PP_0260 and PP_0261 are separated by 14 nucleotides PP_0261 and PP_0262 are separated by 82 nucleotides PP_0262 and PP_0263 overlap by 1 nucleotides
PP_0259: PP_0259 - purine nucleotidase, at 313,878 to 314,540
_0259
PP_0260: PP_0260 - ADP-sugar pyrophosphorylase, at 314,605 to 315,171
_0260
PP_0261: PP_0261 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 315,186 to 315,986
_0261
PP_0262: PP_0262 - conserved protein of unknown function, at 316,069 to 316,524
_0262
PP_0263: PP_0263 - C4-dicarboxylate transport transcriptional regulatory protein, at 316,524 to 317,930
_0263
Position (kb) 315
316 Strain fitness (log2 ratio) -1
0
1 at 314.247 kb on - strand, within PP_0259 at 314.313 kb on + strand, within PP_0259 at 314.313 kb on + strand, within PP_0259 at 314.314 kb on - strand, within PP_0259 at 314.314 kb on - strand, within PP_0259 at 314.341 kb on + strand, within PP_0259 at 314.410 kb on - strand, within PP_0259 at 314.467 kb on + strand, within PP_0259 at 314.468 kb on - strand, within PP_0259 at 314.468 kb on - strand, within PP_0259 at 314.572 kb on + strand at 314.572 kb on + strand at 314.572 kb on + strand at 314.572 kb on + strand at 314.573 kb on - strand at 314.573 kb on - strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.574 kb on + strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.575 kb on - strand at 314.577 kb on + strand at 314.624 kb on + strand at 314.675 kb on + strand, within PP_0260 at 314.675 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.710 kb on + strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.711 kb on - strand, within PP_0260 at 314.800 kb on + strand, within PP_0260 at 314.801 kb on - strand, within PP_0260 at 314.821 kb on + strand, within PP_0260 at 314.822 kb on - strand, within PP_0260 at 314.822 kb on - strand, within PP_0260 at 314.959 kb on + strand, within PP_0260 at 314.960 kb on - strand, within PP_0260 at 314.960 kb on - strand, within PP_0260 at 314.960 kb on - strand, within PP_0260 at 314.960 kb on - strand, within PP_0260 at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.167 kb on + strand at 315.168 kb on - strand at 315.301 kb on + strand, within PP_0261 at 315.380 kb on + strand, within PP_0261 at 315.380 kb on + strand, within PP_0261 at 315.380 kb on + strand, within PP_0261 at 315.381 kb on - strand, within PP_0261 at 315.381 kb on - strand, within PP_0261 at 315.381 kb on - strand, within PP_0261 at 315.381 kb on - strand, within PP_0261 at 315.550 kb on - strand, within PP_0261 at 315.616 kb on + strand, within PP_0261 at 315.616 kb on + strand, within PP_0261 at 315.616 kb on + strand, within PP_0261 at 315.617 kb on - strand, within PP_0261 at 315.617 kb on - strand, within PP_0261 at 315.825 kb on - strand, within PP_0261 at 315.920 kb on + strand at 315.927 kb on + strand at 315.927 kb on + strand at 315.927 kb on + strand at 315.946 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.984 kb on + strand at 315.985 kb on - strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.068 kb on - strand at 316.070 kb on + strand at 316.070 kb on + strand at 316.071 kb on - strand at 316.071 kb on - strand at 316.085 kb on + strand at 316.085 kb on + strand at 316.086 kb on - strand at 316.256 kb on + strand, within PP_0262 at 316.284 kb on + strand, within PP_0262 at 316.284 kb on + strand, within PP_0262 at 316.284 kb on + strand, within PP_0262 at 316.284 kb on + strand, within PP_0262 at 316.285 kb on - strand, within PP_0262 at 316.285 kb on - strand, within PP_0262 at 316.285 kb on - strand, within PP_0262 at 316.359 kb on - strand, within PP_0262 at 316.815 kb on + strand, within PP_0263 at 316.815 kb on + strand, within PP_0263 at 316.941 kb on + strand, within PP_0263 at 316.941 kb on + strand, within PP_0263 at 316.941 kb on + strand, within PP_0263 at 316.941 kb on + strand, within PP_0263 at 316.941 kb on + strand, within PP_0263 at 316.941 kb on + strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.942 kb on - strand, within PP_0263 at 316.974 kb on - strand, within PP_0263
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 314,247 - PP_0259 0.56 -0.8 314,313 + PP_0259 0.66 +0.2 314,313 + PP_0259 0.66 -0.6 314,314 - PP_0259 0.66 -0.4 314,314 - PP_0259 0.66 -0.2 314,341 + PP_0259 0.70 -0.2 314,410 - PP_0259 0.80 -0.2 314,467 + PP_0259 0.89 -0.3 314,468 - PP_0259 0.89 -0.1 314,468 - PP_0259 0.89 +0.4 314,572 + -1.4 314,572 + +0.4 314,572 + +0.6 314,572 + -1.0 314,573 - -0.0 314,573 - -0.1 314,574 + -0.6 314,574 + +0.2 314,574 + -0.2 314,574 + -0.1 314,574 + -0.2 314,575 - -1.1 314,575 - +0.0 314,575 - -0.4 314,575 - -0.2 314,575 - +0.5 314,575 - +0.1 314,575 - -1.7 314,577 + -0.3 314,624 + +0.5 314,675 + PP_0260 0.12 +1.0 314,675 + PP_0260 0.12 -0.7 314,710 + PP_0260 0.19 -0.4 314,710 + PP_0260 0.19 +0.1 314,710 + PP_0260 0.19 +0.2 314,710 + PP_0260 0.19 -0.4 314,711 - PP_0260 0.19 +0.1 314,711 - PP_0260 0.19 -1.0 314,711 - PP_0260 0.19 -0.8 314,711 - PP_0260 0.19 -0.5 314,800 + PP_0260 0.34 -0.5 314,801 - PP_0260 0.35 -0.9 314,821 + PP_0260 0.38 -0.0 314,822 - PP_0260 0.38 +0.2 314,822 - PP_0260 0.38 -0.9 314,959 + PP_0260 0.62 -1.3 314,960 - PP_0260 0.63 -0.2 314,960 - PP_0260 0.63 +0.8 314,960 - PP_0260 0.63 -0.4 314,960 - PP_0260 0.63 -0.8 315,167 + -0.4 315,167 + -1.2 315,167 + +0.4 315,167 + -0.7 315,167 + -0.4 315,167 + +0.1 315,167 + -0.7 315,168 - -0.6 315,301 + PP_0261 0.14 -0.1 315,380 + PP_0261 0.24 +0.3 315,380 + PP_0261 0.24 -0.8 315,380 + PP_0261 0.24 -0.6 315,381 - PP_0261 0.24 -0.8 315,381 - PP_0261 0.24 -0.3 315,381 - PP_0261 0.24 -0.7 315,381 - PP_0261 0.24 -0.9 315,550 - PP_0261 0.45 -0.8 315,616 + PP_0261 0.54 -0.4 315,616 + PP_0261 0.54 -1.3 315,616 + PP_0261 0.54 -1.0 315,617 - PP_0261 0.54 -0.8 315,617 - PP_0261 0.54 -0.1 315,825 - PP_0261 0.80 -1.7 315,920 + -0.4 315,927 + -0.2 315,927 + -1.1 315,927 + -0.1 315,946 + -0.7 315,984 + -0.7 315,984 + +1.3 315,984 + +1.0 315,984 + +0.4 315,984 + -1.0 315,984 + +0.1 315,984 + +0.0 315,984 + -0.4 315,985 - +0.2 316,067 + -1.2 316,067 + -0.7 316,067 + -0.4 316,067 + -0.1 316,068 - -0.1 316,070 + +0.7 316,070 + +0.5 316,071 - +0.0 316,071 - +0.4 316,085 + -0.8 316,085 + +0.5 316,086 - -0.6 316,256 + PP_0262 0.41 -0.2 316,284 + PP_0262 0.47 -0.0 316,284 + PP_0262 0.47 -0.7 316,284 + PP_0262 0.47 +0.2 316,284 + PP_0262 0.47 +0.3 316,285 - PP_0262 0.47 -0.2 316,285 - PP_0262 0.47 -0.2 316,285 - PP_0262 0.47 +0.7 316,359 - PP_0262 0.64 +0.1 316,815 + PP_0263 0.21 +0.1 316,815 + PP_0263 0.21 +0.4 316,941 + PP_0263 0.30 -0.7 316,941 + PP_0263 0.30 +0.3 316,941 + PP_0263 0.30 -1.0 316,941 + PP_0263 0.30 -0.7 316,941 + PP_0263 0.30 +0.8 316,941 + PP_0263 0.30 +1.1 316,942 - PP_0263 0.30 -0.6 316,942 - PP_0263 0.30 -0.1 316,942 - PP_0263 0.30 -0.7 316,942 - PP_0263 0.30 -0.3 316,942 - PP_0263 0.30 -0.1 316,942 - PP_0263 0.30 -0.4 316,942 - PP_0263 0.30 -0.4 316,942 - PP_0263 0.30 -0.1 316,942 - PP_0263 0.30 +0.5 316,942 - PP_0263 0.30 +0.1 316,942 - PP_0263 0.30 +1.0 316,974 - PP_0263 0.32 +1.0
Or see this region's nucleotide sequence