Strain Fitness in Pseudomonas putida KT2440 around PP_0597

Experiment: 3-aminobutyric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0596 and PP_0597 are separated by 73 nucleotidesPP_0597 and PP_16SD are separated by 750 nucleotides PP_0596: PP_0596 - Omega-amino acid--pyruvate aminotransferase, at 694,160 to 695,506 _0596 PP_0597: PP_0597 - methylmalonate-semialdehyde dehydrogenase, at 695,580 to 697,073 _0597 PP_16SD: PP_16SD - 16S ribosomal RNA, at 697,824 to 699,345 _16SD Position (kb) 695 696 697 698Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 694.616 kb on + strand, within PP_0596at 694.617 kb on - strand, within PP_0596at 694.639 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.716 kb on + strand, within PP_0596at 694.717 kb on - strand, within PP_0596at 694.717 kb on - strand, within PP_0596at 694.881 kb on - strand, within PP_0596at 695.079 kb on - strand, within PP_0596at 695.111 kb on + strand, within PP_0596at 695.112 kb on - strand, within PP_0596at 695.136 kb on - strand, within PP_0596at 695.136 kb on - strand, within PP_0596at 695.141 kb on + strand, within PP_0596at 695.142 kb on - strand, within PP_0596at 695.142 kb on - strand, within PP_0596at 695.278 kb on + strand, within PP_0596at 695.297 kb on + strand, within PP_0596at 695.297 kb on + strand, within PP_0596at 695.298 kb on - strand, within PP_0596at 695.357 kb on + strand, within PP_0596at 695.358 kb on - strand, within PP_0596at 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.393 kb on + strandat 695.394 kb on - strandat 695.394 kb on - strandat 695.394 kb on - strandat 695.397 kb on + strandat 695.440 kb on + strandat 695.531 kb on + strandat 695.532 kb on - strandat 695.532 kb on - strandat 695.532 kb on - strandat 695.565 kb on + strandat 695.619 kb on - strandat 695.891 kb on + strand, within PP_0597at 696.054 kb on + strand, within PP_0597at 696.054 kb on + strand, within PP_0597at 696.054 kb on + strand, within PP_0597at 696.126 kb on + strand, within PP_0597at 696.126 kb on + strand, within PP_0597at 696.126 kb on + strand, within PP_0597at 696.127 kb on - strand, within PP_0597at 696.127 kb on - strand, within PP_0597at 696.127 kb on - strand, within PP_0597at 696.127 kb on - strand, within PP_0597at 696.270 kb on + strand, within PP_0597at 696.270 kb on + strand, within PP_0597at 696.271 kb on - strand, within PP_0597at 696.271 kb on - strand, within PP_0597at 696.276 kb on + strand, within PP_0597at 696.277 kb on - strand, within PP_0597at 696.277 kb on - strand, within PP_0597at 696.277 kb on - strand, within PP_0597at 696.307 kb on + strand, within PP_0597at 696.307 kb on + strand, within PP_0597at 696.308 kb on - strand, within PP_0597at 696.651 kb on - strand, within PP_0597at 696.663 kb on + strand, within PP_0597at 696.663 kb on + strand, within PP_0597at 696.663 kb on + strand, within PP_0597at 696.664 kb on - strand, within PP_0597at 696.714 kb on + strand, within PP_0597at 696.714 kb on + strand, within PP_0597at 696.714 kb on + strand, within PP_0597at 696.714 kb on + strand, within PP_0597at 696.715 kb on - strand, within PP_0597at 696.715 kb on - strand, within PP_0597at 696.715 kb on - strand, within PP_0597at 696.715 kb on - strand, within PP_0597at 696.715 kb on - strand, within PP_0597at 696.716 kb on + strand, within PP_0597at 696.717 kb on - strand, within PP_0597at 696.717 kb on - strand, within PP_0597at 696.761 kb on + strand, within PP_0597at 696.761 kb on + strand, within PP_0597at 696.762 kb on - strand, within PP_0597at 696.801 kb on + strand, within PP_0597at 696.802 kb on - strand, within PP_0597at 696.818 kb on + strand, within PP_0597at 696.818 kb on + strand, within PP_0597at 696.819 kb on - strand, within PP_0597at 696.819 kb on - strand, within PP_0597at 696.819 kb on - strand, within PP_0597at 696.819 kb on - strand, within PP_0597at 696.824 kb on + strand, within PP_0597at 696.825 kb on - strand, within PP_0597at 696.825 kb on - strand, within PP_0597at 696.875 kb on + strand, within PP_0597at 696.875 kb on + strand, within PP_0597at 696.876 kb on - strand, within PP_0597at 696.876 kb on - strand, within PP_0597at 696.893 kb on - strand, within PP_0597at 696.893 kb on - strand, within PP_0597at 696.966 kb on + strandat 696.967 kb on - strandat 696.990 kb on + strandat 696.990 kb on + strandat 696.991 kb on - strandat 696.991 kb on - strandat 697.072 kb on - strandat 697.072 kb on - strandat 697.080 kb on + strandat 697.081 kb on - strandat 697.353 kb on + strandat 697.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-aminobutyric (N)
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694,616 + PP_0596 0.34 -5.3
694,617 - PP_0596 0.34 -3.6
694,639 + PP_0596 0.36 -3.8
694,716 + PP_0596 0.41 -4.4
694,716 + PP_0596 0.41 -4.1
694,716 + PP_0596 0.41 -2.7
694,716 + PP_0596 0.41 -3.4
694,716 + PP_0596 0.41 -5.5
694,717 - PP_0596 0.41 -4.2
694,717 - PP_0596 0.41 -3.1
694,881 - PP_0596 0.54 -0.4
695,079 - PP_0596 0.68 -5.1
695,111 + PP_0596 0.71 -4.3
695,112 - PP_0596 0.71 -2.6
695,136 - PP_0596 0.72 -3.2
695,136 - PP_0596 0.72 -1.8
695,141 + PP_0596 0.73 -5.2
695,142 - PP_0596 0.73 -4.0
695,142 - PP_0596 0.73 -4.9
695,278 + PP_0596 0.83 -4.7
695,297 + PP_0596 0.84 -3.7
695,297 + PP_0596 0.84 -3.6
695,298 - PP_0596 0.84 -4.6
695,357 + PP_0596 0.89 -4.2
695,358 - PP_0596 0.89 -2.7
695,393 + -4.4
695,393 + -4.4
695,393 + -3.2
695,393 + -4.0
695,393 + -4.3
695,393 + -5.5
695,393 + -4.0
695,394 - -3.9
695,394 - -4.2
695,394 - -5.1
695,397 + -4.5
695,440 + -4.3
695,531 + -1.7
695,532 - +1.9
695,532 - +1.7
695,532 - +1.9
695,565 + +1.6
695,619 - +2.6
695,891 + PP_0597 0.21 +2.9
696,054 + PP_0597 0.32 +2.9
696,054 + PP_0597 0.32 +2.6
696,054 + PP_0597 0.32 +2.9
696,126 + PP_0597 0.37 +2.5
696,126 + PP_0597 0.37 +3.0
696,126 + PP_0597 0.37 +2.5
696,127 - PP_0597 0.37 +2.8
696,127 - PP_0597 0.37 +2.9
696,127 - PP_0597 0.37 +2.8
696,127 - PP_0597 0.37 +2.9
696,270 + PP_0597 0.46 +3.0
696,270 + PP_0597 0.46 +2.3
696,271 - PP_0597 0.46 +2.8
696,271 - PP_0597 0.46 +3.0
696,276 + PP_0597 0.47 +2.8
696,277 - PP_0597 0.47 +2.7
696,277 - PP_0597 0.47 +3.0
696,277 - PP_0597 0.47 +2.8
696,307 + PP_0597 0.49 +2.8
696,307 + PP_0597 0.49 +2.8
696,308 - PP_0597 0.49 +2.7
696,651 - PP_0597 0.72 +2.8
696,663 + PP_0597 0.72 +2.7
696,663 + PP_0597 0.72 +2.7
696,663 + PP_0597 0.72 +2.6
696,664 - PP_0597 0.73 +2.6
696,714 + PP_0597 0.76 +2.9
696,714 + PP_0597 0.76 +2.8
696,714 + PP_0597 0.76 +2.8
696,714 + PP_0597 0.76 +2.5
696,715 - PP_0597 0.76 +1.8
696,715 - PP_0597 0.76 +3.1
696,715 - PP_0597 0.76 +2.4
696,715 - PP_0597 0.76 +2.6
696,715 - PP_0597 0.76 +2.9
696,716 + PP_0597 0.76 +3.0
696,717 - PP_0597 0.76 +2.6
696,717 - PP_0597 0.76 +2.5
696,761 + PP_0597 0.79 +2.6
696,761 + PP_0597 0.79 +2.8
696,762 - PP_0597 0.79 +2.7
696,801 + PP_0597 0.82 +2.8
696,802 - PP_0597 0.82 +3.3
696,818 + PP_0597 0.83 +2.6
696,818 + PP_0597 0.83 +2.6
696,819 - PP_0597 0.83 +3.0
696,819 - PP_0597 0.83 +3.3
696,819 - PP_0597 0.83 +2.6
696,819 - PP_0597 0.83 +3.2
696,824 + PP_0597 0.83 +2.4
696,825 - PP_0597 0.83 +3.1
696,825 - PP_0597 0.83 +2.7
696,875 + PP_0597 0.87 +2.8
696,875 + PP_0597 0.87 +2.3
696,876 - PP_0597 0.87 +3.0
696,876 - PP_0597 0.87 +2.4
696,893 - PP_0597 0.88 +2.9
696,893 - PP_0597 0.88 +3.0
696,966 + +2.0
696,967 - +2.9
696,990 + +2.9
696,990 + +3.0
696,991 - +3.1
696,991 - +2.7
697,072 - +0.7
697,072 - +0.9
697,080 + +0.6
697,081 - +0.5
697,353 + -0.6
697,353 + -0.2

Or see this region's nucleotide sequence