Strain Fitness in Pseudomonas putida KT2440 around PP_4694

Experiment: DL-2-Aminobutyric (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DL-2-Aminobutyric (N)
5,331,272	+		PP_4692	0.75	-1.9
5,331,272	+		PP_4692	0.75	-1.2
5,331,273	-		PP_4692	0.75	-1.5
5,331,273	-		PP_4692	0.75	-1.3
5,331,367	+		PP_4692	0.83	-1.5
5,331,368	-		PP_4692	0.84	-1.4
5,331,368	-		PP_4692	0.84	-2.2
5,331,547	+				-1.8
5,331,547	+				-2.1
5,331,548	-				+1.3
5,331,595	+				-0.5
5,331,595	+				-1.1
5,331,596	-				+3.6
5,331,639	+				-1.2
5,331,673	+				-1.2
5,331,674	-				-3.6
5,331,674	-				-2.1
5,331,674	-				-4.1
5,331,766	+				-1.9
5,331,766	+				+0.4
5,331,767	-				-0.8
5,331,767	-				-1.3
5,331,767	-				-2.5
5,331,781	+				-1.6
5,331,810	+				-1.0
5,331,811	-				+1.0
5,331,825	+		PP_4693	0.12	-2.5
5,331,825	+		PP_4693	0.12	-2.0
5,331,825	+		PP_4693	0.12	-3.0
5,331,826	-		PP_4693	0.12	-0.3
5,331,849	+		PP_4693	0.17	+0.2
5,331,849	+		PP_4693	0.17	-3.5
5,331,849	+		PP_4693	0.17	-3.9
5,331,849	+		PP_4693	0.17	-1.9
5,331,849	+		PP_4693	0.17	-3.7
5,331,849	+		PP_4693	0.17	-4.0
5,331,850	-		PP_4693	0.18	-1.8
5,331,850	-		PP_4693	0.18	-1.3
5,331,850	-		PP_4693	0.18	-1.0
5,331,850	-		PP_4693	0.18	-0.3
5,331,850	-		PP_4693	0.18	+0.4
5,331,850	-		PP_4693	0.18	-1.0
5,331,850	-		PP_4693	0.18	+1.0
5,331,850	-		PP_4693	0.18	+1.0
5,331,942	-		PP_4693	0.38	-0.0
5,331,942	-		PP_4693	0.38	+2.0
5,331,942	-		PP_4693	0.38	-0.5
5,332,090	-		PP_4693	0.71	-0.8
5,332,149	-		PP_4693	0.85	+2.0
5,332,176	+				-2.0
5,332,263	+				+0.6
5,332,263	+				+0.6
5,332,263	+				+0.1
5,332,263	+				+0.2
5,332,263	+				-0.6
5,332,263	+				+0.6
5,332,264	-				+0.4
5,332,264	-				+0.7
5,332,264	-				-0.0
5,332,264	-				+0.6
5,332,264	-				+0.9
5,332,265	+				+0.3
5,332,265	+				+0.2
5,332,266	-				+1.9
5,332,296	+				+0.8
5,332,296	+				+0.5
5,332,297	-				+0.5
5,332,508	-		PP_4694	0.27	+1.1
5,332,508	-		PP_4694	0.27	+0.5
5,332,533	+		PP_4694	0.30	+0.5
5,332,533	+		PP_4694	0.30	+0.9
5,332,533	+		PP_4694	0.30	+0.5
5,332,533	+		PP_4694	0.30	+1.1
5,332,534	-		PP_4694	0.30	+0.7
5,332,534	-		PP_4694	0.30	+1.3
5,332,546	+		PP_4694	0.31	+0.8
5,332,547	-		PP_4694	0.31	+1.0
5,332,611	+		PP_4694	0.38	+0.5
5,332,611	+		PP_4694	0.38	+0.8
5,332,612	-		PP_4694	0.38	+1.0
5,332,612	-		PP_4694	0.38	-0.5
5,332,623	+		PP_4694	0.40	+1.4
5,332,623	+		PP_4694	0.40	+0.9
5,332,623	+		PP_4694	0.40	-0.4
5,332,624	-		PP_4694	0.40	+0.5
5,332,624	-		PP_4694	0.40	+1.5
5,332,624	-		PP_4694	0.40	+1.1
5,332,698	+		PP_4694	0.48	-1.9
5,332,698	+		PP_4694	0.48	+0.4
5,332,728	+		PP_4694	0.51	+0.1
5,332,728	+		PP_4694	0.51	+0.6
5,332,788	+		PP_4694	0.58	+0.7
5,332,789	-		PP_4694	0.58	+0.7
5,332,789	-		PP_4694	0.58	+1.0
5,332,789	-		PP_4694	0.58	+2.4
5,332,789	-		PP_4694	0.58	+0.5
5,332,795	-		PP_4694	0.59	+1.2
5,332,795	-		PP_4694	0.59	+0.4
5,332,795	-		PP_4694	0.59	+0.1
5,332,887	+		PP_4694	0.69	-0.3
5,332,888	-		PP_4694	0.69	+1.1
5,332,888	-		PP_4694	0.69	+1.4
5,332,931	+		PP_4694	0.74	+0.7
5,332,931	+		PP_4694	0.74	-0.0
5,332,931	+		PP_4694	0.74	+2.3
5,332,931	+		PP_4694	0.74	-0.0
5,332,932	-		PP_4694	0.74	+0.6
5,332,932	-		PP_4694	0.74	-0.6
5,333,174	+				+0.6
5,333,344	-				+1.4
5,333,373	+				-0.2
5,333,373	+				-1.5
5,333,374	-				+2.7
5,333,374	-				+2.5
5,333,374	-				+3.0
5,333,414	+				-0.1
5,333,414	+				-1.8
5,333,414	+				-0.9
5,333,414	+				+1.1
5,333,414	+				+0.2
5,333,414	+				-1.0
5,333,414	+				+0.4
5,333,414	+				-0.6
5,333,414	+				-1.6
5,333,414	+				-0.5
5,333,414	+				+2.0
5,333,415	-				+2.4
5,333,415	-				+1.9
5,333,415	-				+2.3
5,333,415	-				+2.5
5,333,421	-				+2.0
5,333,453	+		PP_5704	0.24	-2.6
5,333,453	+		PP_5704	0.24	-2.2
5,333,454	-		PP_5704	0.24	+1.3
5,333,454	-		PP_5704	0.24	+1.9
5,333,454	-		PP_5704	0.24	+1.9
5,333,454	-		PP_5704	0.24	+1.2
5,333,516	+		PP_5704	0.59	-2.3
5,333,569	-		PP_5704	0.89	+2.3
5,333,585	+				+1.6
5,333,585	+				+2.2
5,333,620	-				+1.9
5,333,696	+				+0.6
5,333,696	+				+2.2
5,333,696	+				+2.1
5,333,696	+				+2.6
5,333,697	-				+1.5
5,333,697	-				+2.2
5,333,697	-				+1.2
5,333,700	+				+1.2
5,333,700	+				+1.4
5,333,700	+				+1.0
5,333,700	+				+2.0
5,333,701	-				+1.7
5,333,701	-				+1.4
5,333,701	-				+1.9
5,333,701	-				+2.4
5,333,701	-				+1.4
5,333,701	-				+2.0
5,333,701	-				+1.5
5,333,721	+				+1.8
5,333,722	-				+3.0
5,333,722	-				+2.2
5,333,742	+				+1.9
5,333,742	+				+2.1
5,333,742	+				+0.6
5,333,742	+				+1.9
5,333,742	+				+2.3
5,333,743	-				+1.6
5,333,743	-				+2.0
5,333,743	-				+2.0
5,333,743	-				+2.2
5,333,743	-				+3.1
5,333,763	+				+2.0
5,333,763	+				+2.5
5,333,763	+				+1.8
5,333,764	-				+2.2
5,333,764	-				+2.1
5,333,764	-				+1.9
5,333,769	+				+2.1
5,333,865	+				+2.1
5,333,865	+				+1.2
5,333,866	-				+1.8
5,333,866	-				+1.2
5,333,866	-				+1.4
5,333,913	-		PP_4695	0.11	+1.9
5,334,005	+		PP_4695	0.15	+1.6