Strain Fitness in Pseudomonas putida KT2440 around PP_4403

Experiment: DL-2-Aminobutyric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4402 and PP_4403 are separated by 0 nucleotidesPP_4403 and PP_4404 are separated by 2 nucleotides PP_4402: PP_4402 - branched-chain alpha-keto acid dehydrogenase complex, beta subunit, at 4,993,317 to 4,994,336 _4402 PP_4403: PP_4403 - Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, at 4,994,337 to 4,995,608 _4403 PP_4404: PP_4404 - dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex, at 4,995,611 to 4,996,990 _4404 Position (kb) 4994 4995 4996Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4993.420 kb on - strand, within PP_4402at 4993.420 kb on - strand, within PP_4402at 4993.465 kb on - strand, within PP_4402at 4993.578 kb on + strand, within PP_4402at 4993.578 kb on + strand, within PP_4402at 4993.578 kb on + strand, within PP_4402at 4993.579 kb on - strand, within PP_4402at 4993.579 kb on - strand, within PP_4402at 4993.692 kb on + strand, within PP_4402at 4993.692 kb on + strand, within PP_4402at 4993.692 kb on + strand, within PP_4402at 4993.692 kb on + strand, within PP_4402at 4993.692 kb on + strand, within PP_4402at 4993.693 kb on - strand, within PP_4402at 4993.693 kb on - strand, within PP_4402at 4993.693 kb on - strand, within PP_4402at 4993.776 kb on + strand, within PP_4402at 4993.777 kb on - strand, within PP_4402at 4993.777 kb on - strand, within PP_4402at 4993.777 kb on - strand, within PP_4402at 4993.851 kb on + strand, within PP_4402at 4993.852 kb on - strand, within PP_4402at 4993.852 kb on - strand, within PP_4402at 4993.852 kb on - strand, within PP_4402at 4993.889 kb on - strand, within PP_4402at 4993.932 kb on + strand, within PP_4402at 4993.935 kb on + strand, within PP_4402at 4993.935 kb on + strand, within PP_4402at 4993.936 kb on - strand, within PP_4402at 4993.942 kb on + strand, within PP_4402at 4993.998 kb on + strand, within PP_4402at 4993.999 kb on - strand, within PP_4402at 4994.013 kb on + strand, within PP_4402at 4994.014 kb on - strand, within PP_4402at 4994.014 kb on - strand, within PP_4402at 4994.100 kb on - strand, within PP_4402at 4994.280 kb on + strandat 4994.668 kb on + strand, within PP_4403at 4994.799 kb on + strand, within PP_4403at 4994.799 kb on + strand, within PP_4403at 4994.800 kb on - strand, within PP_4403at 4994.800 kb on - strand, within PP_4403at 4994.800 kb on - strand, within PP_4403at 4994.829 kb on - strand, within PP_4403at 4994.898 kb on + strand, within PP_4403at 4994.899 kb on - strand, within PP_4403at 4995.000 kb on + strand, within PP_4403at 4995.000 kb on + strand, within PP_4403at 4995.001 kb on - strand, within PP_4403at 4995.001 kb on - strand, within PP_4403at 4995.153 kb on + strand, within PP_4403at 4995.153 kb on + strand, within PP_4403at 4995.154 kb on - strand, within PP_4403at 4995.314 kb on + strand, within PP_4403at 4995.315 kb on - strand, within PP_4403at 4995.315 kb on - strand, within PP_4403at 4995.564 kb on + strandat 4995.565 kb on + strandat 4995.566 kb on - strandat 4995.623 kb on - strandat 4995.631 kb on + strandat 4995.632 kb on - strandat 4995.665 kb on + strandat 4995.665 kb on + strandat 4995.666 kb on - strandat 4995.666 kb on - strandat 4995.666 kb on - strandat 4995.669 kb on + strandat 4995.669 kb on + strandat 4995.669 kb on + strandat 4995.669 kb on + strandat 4995.669 kb on + strandat 4995.670 kb on - strandat 4995.670 kb on - strandat 4995.670 kb on - strandat 4995.670 kb on - strandat 4995.670 kb on - strandat 4995.670 kb on - strandat 4995.704 kb on - strandat 4995.814 kb on + strand, within PP_4404at 4995.973 kb on - strand, within PP_4404at 4996.063 kb on + strand, within PP_4404at 4996.063 kb on + strand, within PP_4404at 4996.063 kb on + strand, within PP_4404at 4996.064 kb on - strandat 4996.064 kb on - strand, within PP_4404at 4996.154 kb on + strand, within PP_4404at 4996.154 kb on + strand, within PP_4404at 4996.156 kb on + strand, within PP_4404at 4996.182 kb on - strand, within PP_4404at 4996.182 kb on - strand, within PP_4404at 4996.241 kb on + strand, within PP_4404at 4996.241 kb on + strand, within PP_4404at 4996.293 kb on + strand, within PP_4404at 4996.294 kb on - strand, within PP_4404at 4996.294 kb on - strand, within PP_4404at 4996.392 kb on + strand, within PP_4404at 4996.392 kb on + strand, within PP_4404at 4996.392 kb on + strand, within PP_4404at 4996.393 kb on - strand, within PP_4404at 4996.393 kb on - strand, within PP_4404

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Per-strain Table

Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N)
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4,993,420 - PP_4402 0.10 -1.5
4,993,420 - PP_4402 0.10 -1.0
4,993,465 - PP_4402 0.15 -1.7
4,993,578 + PP_4402 0.26 -2.0
4,993,578 + PP_4402 0.26 -1.6
4,993,578 + PP_4402 0.26 -1.5
4,993,579 - PP_4402 0.26 -1.0
4,993,579 - PP_4402 0.26 -1.2
4,993,692 + PP_4402 0.37 -0.7
4,993,692 + PP_4402 0.37 -1.4
4,993,692 + PP_4402 0.37 -2.0
4,993,692 + PP_4402 0.37 -0.7
4,993,692 + PP_4402 0.37 -0.8
4,993,693 - PP_4402 0.37 -1.8
4,993,693 - PP_4402 0.37 -1.2
4,993,693 - PP_4402 0.37 -1.7
4,993,776 + PP_4402 0.45 -0.8
4,993,777 - PP_4402 0.45 -2.3
4,993,777 - PP_4402 0.45 -0.9
4,993,777 - PP_4402 0.45 -1.0
4,993,851 + PP_4402 0.52 -1.2
4,993,852 - PP_4402 0.52 -1.2
4,993,852 - PP_4402 0.52 -0.8
4,993,852 - PP_4402 0.52 -2.3
4,993,889 - PP_4402 0.56 -1.1
4,993,932 + PP_4402 0.60 -1.5
4,993,935 + PP_4402 0.61 -0.2
4,993,935 + PP_4402 0.61 -0.7
4,993,936 - PP_4402 0.61 -1.2
4,993,942 + PP_4402 0.61 -1.7
4,993,998 + PP_4402 0.67 -1.1
4,993,999 - PP_4402 0.67 -1.4
4,994,013 + PP_4402 0.68 -1.9
4,994,014 - PP_4402 0.68 -3.2
4,994,014 - PP_4402 0.68 -2.4
4,994,100 - PP_4402 0.77 -2.1
4,994,280 + -0.8
4,994,668 + PP_4403 0.26 -2.1
4,994,799 + PP_4403 0.36 -1.4
4,994,799 + PP_4403 0.36 -1.4
4,994,800 - PP_4403 0.36 -2.1
4,994,800 - PP_4403 0.36 -1.1
4,994,800 - PP_4403 0.36 -1.5
4,994,829 - PP_4403 0.39 -1.3
4,994,898 + PP_4403 0.44 -2.1
4,994,899 - PP_4403 0.44 -1.9
4,995,000 + PP_4403 0.52 -1.4
4,995,000 + PP_4403 0.52 -2.7
4,995,001 - PP_4403 0.52 -1.5
4,995,001 - PP_4403 0.52 -3.3
4,995,153 + PP_4403 0.64 -1.0
4,995,153 + PP_4403 0.64 -3.0
4,995,154 - PP_4403 0.64 -0.5
4,995,314 + PP_4403 0.77 -2.1
4,995,315 - PP_4403 0.77 -1.3
4,995,315 - PP_4403 0.77 -2.6
4,995,564 + -2.9
4,995,565 + -1.2
4,995,566 - -2.6
4,995,623 - -0.7
4,995,631 + -1.0
4,995,632 - -1.6
4,995,665 + -1.8
4,995,665 + -3.9
4,995,666 - -1.3
4,995,666 - -0.3
4,995,666 - -0.9
4,995,669 + -2.2
4,995,669 + -1.5
4,995,669 + -1.6
4,995,669 + -2.8
4,995,669 + -1.7
4,995,670 - -1.6
4,995,670 - -1.2
4,995,670 - -1.2
4,995,670 - -1.7
4,995,670 - +0.4
4,995,670 - -1.9
4,995,704 - +0.1
4,995,814 + PP_4404 0.15 -0.8
4,995,973 - PP_4404 0.26 -1.8
4,996,063 + PP_4404 0.33 -2.2
4,996,063 + PP_4404 0.33 -0.6
4,996,063 + PP_4404 0.33 -0.6
4,996,064 - +0.2
4,996,064 - PP_4404 0.33 -0.6
4,996,154 + PP_4404 0.39 -1.7
4,996,154 + PP_4404 0.39 -0.7
4,996,156 + PP_4404 0.39 +0.3
4,996,182 - PP_4404 0.41 -1.0
4,996,182 - PP_4404 0.41 -0.1
4,996,241 + PP_4404 0.46 -1.2
4,996,241 + PP_4404 0.46 -0.2
4,996,293 + PP_4404 0.49 -0.9
4,996,294 - PP_4404 0.49 -0.5
4,996,294 - PP_4404 0.49 +0.2
4,996,392 + PP_4404 0.57 -1.5
4,996,392 + PP_4404 0.57 -0.1
4,996,392 + PP_4404 0.57 -1.4
4,996,393 - PP_4404 0.57 -1.3
4,996,393 - PP_4404 0.57 -1.8

Or see this region's nucleotide sequence