Experiment: 2,6-diaminopimelic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1437 and PP_1438 overlap by 4 nucleotides PP_1438 and PP_1439 are separated by 310 nucleotides PP_1439 and PP_1440 are separated by 69 nucleotides
PP_1437: PP_1437 - Heavy metal sensor histidine kinase, at 1,637,357 to 1,638,739
_1437
PP_1438: PP_1438 - response regulator, at 1,638,736 to 1,639,410
_1438
PP_1439: PP_1439 - conserved exported protein of unknown function, at 1,639,721 to 1,639,924
_1439
PP_1440: PP_1440 - tRNA (mo5U34)-methyltransferase, at 1,639,994 to 1,640,950
_1440
Position (kb) 1639
1640 Strain fitness (log2 ratio) -1
0
1
2 at 1638.754 kb on + strand at 1638.759 kb on - strand at 1638.777 kb on + strand at 1638.777 kb on + strand at 1639.122 kb on - strand, within PP_1438 at 1639.122 kb on - strand, within PP_1438 at 1639.122 kb on - strand, within PP_1438 at 1639.122 kb on - strand, within PP_1438 at 1639.122 kb on - strand, within PP_1438 at 1639.277 kb on + strand, within PP_1438 at 1639.277 kb on + strand, within PP_1438 at 1639.278 kb on - strand, within PP_1438 at 1639.278 kb on - strand, within PP_1438 at 1639.278 kb on - strand, within PP_1438 at 1639.337 kb on + strand, within PP_1438 at 1639.338 kb on - strand, within PP_1438 at 1639.367 kb on + strand at 1639.368 kb on - strand at 1639.403 kb on - strand at 1639.422 kb on + strand at 1639.423 kb on - strand at 1639.453 kb on - strand at 1639.453 kb on - strand at 1639.523 kb on + strand at 1639.568 kb on - strand at 1639.581 kb on + strand at 1639.582 kb on - strand at 1639.582 kb on - strand at 1639.582 kb on - strand at 1639.643 kb on + strand at 1639.706 kb on + strand at 1639.706 kb on + strand at 1639.706 kb on + strand at 1639.706 kb on + strand at 1639.737 kb on - strand at 1639.737 kb on - strand at 1639.737 kb on - strand at 1639.778 kb on + strand, within PP_1439 at 1639.779 kb on - strand, within PP_1439 at 1639.966 kb on + strand at 1639.967 kb on - strand at 1639.967 kb on - strand at 1639.967 kb on - strand at 1639.967 kb on - strand at 1639.967 kb on - strand at 1640.211 kb on + strand, within PP_1440 at 1640.212 kb on - strand, within PP_1440 at 1640.365 kb on - strand, within PP_1440 at 1640.365 kb on - strand, within PP_1440 at 1640.365 kb on - strand, within PP_1440 at 1640.365 kb on - strand, within PP_1440 at 1640.365 kb on - strand, within PP_1440 at 1640.463 kb on + strand, within PP_1440 at 1640.464 kb on - strand, within PP_1440 at 1640.464 kb on - strand, within PP_1440 at 1640.557 kb on - strand, within PP_1440 at 1640.557 kb on - strand, within PP_1440 at 1640.557 kb on - strand, within PP_1440 at 1640.560 kb on - strand, within PP_1440
Per-strain Table
Position Strand Gene LocusTag Fraction 2,6-diaminopimelic (N) remove 1,638,754 + +0.1 1,638,759 - -0.5 1,638,777 + -0.9 1,638,777 + -0.3 1,639,122 - PP_1438 0.57 +0.6 1,639,122 - PP_1438 0.57 +0.4 1,639,122 - PP_1438 0.57 +0.0 1,639,122 - PP_1438 0.57 +0.4 1,639,122 - PP_1438 0.57 -0.1 1,639,277 + PP_1438 0.80 +0.0 1,639,277 + PP_1438 0.80 +0.2 1,639,278 - PP_1438 0.80 +0.3 1,639,278 - PP_1438 0.80 -0.2 1,639,278 - PP_1438 0.80 -1.0 1,639,337 + PP_1438 0.89 +0.0 1,639,338 - PP_1438 0.89 +0.6 1,639,367 + -1.6 1,639,368 - -0.3 1,639,403 - +0.7 1,639,422 + +0.2 1,639,423 - -0.8 1,639,453 - +2.0 1,639,453 - +0.1 1,639,523 + +1.3 1,639,568 - -0.0 1,639,581 + -1.0 1,639,582 - +0.7 1,639,582 - -0.8 1,639,582 - -0.8 1,639,643 + -0.5 1,639,706 + -0.4 1,639,706 + -1.0 1,639,706 + -0.2 1,639,706 + -0.2 1,639,737 - -0.4 1,639,737 - -0.9 1,639,737 - -0.9 1,639,778 + PP_1439 0.28 -0.6 1,639,779 - PP_1439 0.28 -0.4 1,639,966 + -0.0 1,639,967 - +0.1 1,639,967 - -0.1 1,639,967 - +0.3 1,639,967 - +0.3 1,639,967 - +0.3 1,640,211 + PP_1440 0.23 -0.3 1,640,212 - PP_1440 0.23 -0.5 1,640,365 - PP_1440 0.39 +0.1 1,640,365 - PP_1440 0.39 -0.0 1,640,365 - PP_1440 0.39 +0.7 1,640,365 - PP_1440 0.39 +0.8 1,640,365 - PP_1440 0.39 +0.9 1,640,463 + PP_1440 0.49 -1.0 1,640,464 - PP_1440 0.49 +0.1 1,640,464 - PP_1440 0.49 +0.9 1,640,557 - PP_1440 0.59 -0.9 1,640,557 - PP_1440 0.59 +0.3 1,640,557 - PP_1440 0.59 +0.4 1,640,560 - PP_1440 0.59 -0.3
Or see this region's nucleotide sequence