Strain Fitness in Pseudomonas putida KT2440 around PP_1705

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1703 and PP_1705 are separated by 270 nucleotidesPP_1705 and PP_1706 overlap by 1 nucleotidesPP_1706 and PP_1707 are separated by 127 nucleotides PP_1703: PP_1703 - assimilatory nitrate reductase/sulfite reductase, at 1,899,450 to 1,903,475 _1703 PP_1705: PP_1705 - nitrite reductase [NAD(P)H] large subunit, at 1,903,746 to 1,906,298 _1705 PP_1706: PP_1706 - Nitrite reductase, at 1,906,298 to 1,906,660 _1706 PP_1707: PP_1707 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 1,906,788 to 1,907,738 _1707 Position (kb) 1903 1904 1905 1906 1907Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1902.855 kb on + strand, within PP_1703at 1902.933 kb on - strand, within PP_1703at 1903.061 kb on + strand, within PP_1703at 1903.167 kb on + strandat 1903.167 kb on + strandat 1903.168 kb on - strandat 1903.171 kb on - strandat 1903.254 kb on + strandat 1903.254 kb on + strandat 1903.254 kb on + strandat 1903.254 kb on + strandat 1903.254 kb on + strandat 1903.255 kb on - strandat 1903.255 kb on - strandat 1903.255 kb on - strandat 1903.255 kb on - strandat 1903.255 kb on - strandat 1903.317 kb on + strandat 1903.317 kb on + strandat 1903.317 kb on + strandat 1903.318 kb on - strandat 1903.318 kb on - strandat 1903.323 kb on + strandat 1903.323 kb on + strandat 1903.323 kb on + strandat 1903.323 kb on + strandat 1903.323 kb on + strandat 1903.324 kb on - strandat 1903.324 kb on - strandat 1903.470 kb on + strandat 1903.471 kb on - strandat 1903.542 kb on - strandat 1903.620 kb on + strandat 1903.630 kb on + strandat 1903.631 kb on - strandat 1903.684 kb on + strandat 1903.684 kb on + strandat 1903.685 kb on - strandat 1903.685 kb on - strandat 1903.685 kb on - strandat 1903.745 kb on + strandat 1903.896 kb on + strandat 1904.061 kb on + strand, within PP_1705at 1904.097 kb on + strand, within PP_1705at 1904.149 kb on - strand, within PP_1705at 1904.362 kb on + strand, within PP_1705at 1904.363 kb on - strand, within PP_1705at 1904.363 kb on - strand, within PP_1705at 1904.363 kb on - strand, within PP_1705at 1904.418 kb on + strand, within PP_1705at 1904.419 kb on - strand, within PP_1705at 1904.649 kb on + strand, within PP_1705at 1904.898 kb on + strand, within PP_1705at 1904.898 kb on + strand, within PP_1705at 1904.899 kb on - strand, within PP_1705at 1904.902 kb on - strand, within PP_1705at 1904.919 kb on + strand, within PP_1705at 1905.247 kb on - strand, within PP_1705at 1905.453 kb on + strandat 1905.453 kb on + strand, within PP_1705at 1905.454 kb on - strand, within PP_1705at 1905.454 kb on - strand, within PP_1705at 1905.454 kb on - strand, within PP_1705at 1905.454 kb on - strand, within PP_1705at 1905.454 kb on - strandat 1905.488 kb on - strand, within PP_1705at 1905.541 kb on - strand, within PP_1705at 1905.673 kb on + strand, within PP_1705at 1905.674 kb on - strand, within PP_1705at 1905.753 kb on + strand, within PP_1705at 1905.753 kb on + strand, within PP_1705at 1905.873 kb on + strand, within PP_1705at 1905.949 kb on + strand, within PP_1705at 1906.048 kb on - strandat 1906.129 kb on - strandat 1906.129 kb on - strandat 1906.129 kb on - strandat 1906.422 kb on - strand, within PP_1706at 1906.448 kb on + strand, within PP_1706at 1906.449 kb on - strand, within PP_1706at 1906.449 kb on - strand, within PP_1706at 1906.486 kb on + strand, within PP_1706at 1906.486 kb on + strand, within PP_1706at 1906.487 kb on - strand, within PP_1706at 1906.547 kb on + strand, within PP_1706at 1906.547 kb on + strand, within PP_1706at 1906.729 kb on + strandat 1906.729 kb on + strandat 1906.730 kb on - strandat 1906.730 kb on - strandat 1906.789 kb on + strandat 1906.789 kb on + strandat 1906.789 kb on + strandat 1906.790 kb on - strandat 1906.793 kb on + strandat 1906.794 kb on - strandat 1906.875 kb on + strandat 1906.875 kb on + strandat 1906.875 kb on + strandat 1906.876 kb on - strandat 1906.908 kb on + strand, within PP_1707at 1906.908 kb on + strand, within PP_1707at 1907.022 kb on + strand, within PP_1707at 1907.022 kb on + strand, within PP_1707at 1907.022 kb on + strand, within PP_1707at 1907.023 kb on - strandat 1907.023 kb on - strand, within PP_1707at 1907.053 kb on + strand, within PP_1707at 1907.199 kb on + strand, within PP_1707at 1907.199 kb on + strand, within PP_1707at 1907.209 kb on + strand, within PP_1707

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,902,855 + PP_1703 0.85 -3.9
1,902,933 - PP_1703 0.87 -2.1
1,903,061 + PP_1703 0.90 -3.2
1,903,167 + -3.3
1,903,167 + -3.6
1,903,168 - -2.5
1,903,171 - -2.7
1,903,254 + -3.5
1,903,254 + -3.2
1,903,254 + -3.9
1,903,254 + -3.5
1,903,254 + -2.4
1,903,255 - -3.7
1,903,255 - -2.4
1,903,255 - -2.3
1,903,255 - -2.3
1,903,255 - -3.4
1,903,317 + -2.7
1,903,317 + -5.1
1,903,317 + -1.6
1,903,318 - -2.0
1,903,318 - -2.4
1,903,323 + -3.6
1,903,323 + -2.4
1,903,323 + -2.0
1,903,323 + -5.0
1,903,323 + -1.6
1,903,324 - -2.6
1,903,324 - -2.8
1,903,470 + -2.8
1,903,471 - -1.6
1,903,542 - -1.1
1,903,620 + -1.1
1,903,630 + -2.4
1,903,631 - -2.4
1,903,684 + -2.8
1,903,684 + -2.8
1,903,685 - -2.5
1,903,685 - -3.3
1,903,685 - -2.7
1,903,745 + -2.9
1,903,896 + -2.9
1,904,061 + PP_1705 0.12 -3.7
1,904,097 + PP_1705 0.14 -4.9
1,904,149 - PP_1705 0.16 -4.5
1,904,362 + PP_1705 0.24 -4.2
1,904,363 - PP_1705 0.24 -2.3
1,904,363 - PP_1705 0.24 -2.7
1,904,363 - PP_1705 0.24 -3.2
1,904,418 + PP_1705 0.26 -3.5
1,904,419 - PP_1705 0.26 -3.5
1,904,649 + PP_1705 0.35 -1.9
1,904,898 + PP_1705 0.45 -3.5
1,904,898 + PP_1705 0.45 -2.6
1,904,899 - PP_1705 0.45 -2.7
1,904,902 - PP_1705 0.45 -1.2
1,904,919 + PP_1705 0.46 -4.0
1,905,247 - PP_1705 0.59 -2.3
1,905,453 + -0.9
1,905,453 + PP_1705 0.67 -2.7
1,905,454 - PP_1705 0.67 -4.2
1,905,454 - PP_1705 0.67 -4.1
1,905,454 - PP_1705 0.67 -4.7
1,905,454 - PP_1705 0.67 -1.8
1,905,454 - -0.9
1,905,488 - PP_1705 0.68 -2.8
1,905,541 - PP_1705 0.70 -4.3
1,905,673 + PP_1705 0.75 -3.1
1,905,674 - PP_1705 0.76 -3.3
1,905,753 + PP_1705 0.79 -2.4
1,905,753 + PP_1705 0.79 -4.1
1,905,873 + PP_1705 0.83 -3.4
1,905,949 + PP_1705 0.86 -5.6
1,906,048 - -1.4
1,906,129 - -1.7
1,906,129 - +0.4
1,906,129 - -0.9
1,906,422 - PP_1706 0.34 -3.7
1,906,448 + PP_1706 0.41 -4.3
1,906,449 - PP_1706 0.42 -2.9
1,906,449 - PP_1706 0.42 -3.2
1,906,486 + PP_1706 0.52 -4.5
1,906,486 + PP_1706 0.52 -2.2
1,906,487 - PP_1706 0.52 -4.9
1,906,547 + PP_1706 0.69 -2.6
1,906,547 + PP_1706 0.69 -1.3
1,906,729 + -0.3
1,906,729 + +0.5
1,906,730 - -0.3
1,906,730 - -1.0
1,906,789 + +1.0
1,906,789 + +0.2
1,906,789 + +0.4
1,906,790 - +0.0
1,906,793 + -0.6
1,906,794 - +0.1
1,906,875 + -0.0
1,906,875 + -1.1
1,906,875 + -0.4
1,906,876 - -0.8
1,906,908 + PP_1707 0.13 -0.0
1,906,908 + PP_1707 0.13 +0.0
1,907,022 + PP_1707 0.25 +1.2
1,907,022 + PP_1707 0.25 +0.7
1,907,022 + PP_1707 0.25 -0.0
1,907,023 - +1.0
1,907,023 - PP_1707 0.25 -0.3
1,907,053 + PP_1707 0.28 -0.6
1,907,199 + PP_1707 0.43 +0.1
1,907,199 + PP_1707 0.43 +0.3
1,907,209 + PP_1707 0.44 +0.4

Or see this region's nucleotide sequence