Strain Fitness in Pseudomonas putida KT2440 around PP_4922

Experiment: 4-aminobutyric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4921 and PP_4922 are separated by 144 nucleotidesPP_4922 and PP_4923 are separated by 421 nucleotides PP_4921: PP_4921 - Transporter, NCS1 nucleoside transporter family, at 5,592,770 to 5,594,053 _4921 PP_4922: PP_4922 - Phosphomethylpyrimidine synthase, at 5,594,198 to 5,596,078 _4922 PP_4923: PP_4923 - Outer membrane efflux protein, at 5,596,500 to 5,597,933 _4923 Position (kb) 5594 5595 5596 5597Strain fitness (log2 ratio) -2 -1 0 1 2at 5593.281 kb on + strand, within PP_4921at 5593.282 kb on - strand, within PP_4921at 5593.282 kb on - strand, within PP_4921at 5593.323 kb on + strand, within PP_4921at 5593.323 kb on + strand, within PP_4921at 5593.377 kb on + strandat 5593.559 kb on + strand, within PP_4921at 5593.560 kb on - strand, within PP_4921at 5593.560 kb on - strand, within PP_4921at 5593.560 kb on - strand, within PP_4921at 5593.709 kb on - strand, within PP_4921at 5593.832 kb on - strand, within PP_4921at 5593.908 kb on - strand, within PP_4921at 5594.077 kb on + strandat 5594.077 kb on + strandat 5594.077 kb on + strandat 5594.078 kb on - strandat 5594.086 kb on + strandat 5594.086 kb on + strandat 5594.086 kb on + strandat 5594.086 kb on + strandat 5594.087 kb on - strandat 5594.087 kb on - strandat 5594.087 kb on - strandat 5594.087 kb on - strandat 5594.185 kb on - strandat 5594.185 kb on - strandat 5594.185 kb on - strandat 5594.212 kb on - strandat 5594.301 kb on + strandat 5594.301 kb on + strandat 5594.302 kb on - strandat 5594.361 kb on - strandat 5594.550 kb on + strand, within PP_4922at 5594.551 kb on - strand, within PP_4922at 5594.551 kb on - strand, within PP_4922at 5594.616 kb on + strand, within PP_4922at 5594.616 kb on + strand, within PP_4922at 5594.617 kb on - strand, within PP_4922at 5594.721 kb on + strand, within PP_4922at 5594.722 kb on - strand, within PP_4922at 5594.943 kb on + strand, within PP_4922at 5594.943 kb on + strand, within PP_4922at 5594.943 kb on + strand, within PP_4922at 5594.944 kb on - strand, within PP_4922at 5594.982 kb on + strand, within PP_4922at 5594.983 kb on - strand, within PP_4922at 5595.081 kb on + strand, within PP_4922at 5595.082 kb on - strand, within PP_4922at 5595.082 kb on - strand, within PP_4922at 5595.114 kb on + strand, within PP_4922at 5595.211 kb on - strand, within PP_4922at 5595.402 kb on - strand, within PP_4922at 5595.584 kb on + strand, within PP_4922at 5595.585 kb on - strand, within PP_4922at 5595.585 kb on - strand, within PP_4922at 5595.612 kb on + strand, within PP_4922at 5595.612 kb on + strand, within PP_4922at 5595.612 kb on + strand, within PP_4922at 5595.613 kb on - strand, within PP_4922at 5595.648 kb on + strand, within PP_4922at 5595.648 kb on + strand, within PP_4922at 5595.648 kb on + strand, within PP_4922at 5595.648 kb on + strand, within PP_4922at 5595.648 kb on + strand, within PP_4922at 5595.648 kb on + strand, within PP_4922at 5595.648 kb on + strand, within PP_4922at 5595.649 kb on - strand, within PP_4922at 5595.649 kb on - strand, within PP_4922at 5595.883 kb on - strand, within PP_4922at 5595.883 kb on - strand, within PP_4922at 5595.883 kb on - strand, within PP_4922at 5595.987 kb on + strandat 5595.987 kb on + strandat 5595.987 kb on + strandat 5595.988 kb on - strandat 5595.988 kb on - strandat 5595.988 kb on - strandat 5595.988 kb on - strandat 5596.103 kb on - strandat 5596.187 kb on + strandat 5596.187 kb on + strandat 5596.187 kb on + strandat 5596.188 kb on - strandat 5596.188 kb on - strandat 5596.188 kb on - strandat 5596.436 kb on + strandat 5596.436 kb on + strandat 5596.437 kb on - strandat 5596.437 kb on - strandat 5596.475 kb on + strandat 5596.499 kb on + strandat 5596.499 kb on + strandat 5596.499 kb on + strandat 5596.500 kb on - strandat 5596.657 kb on - strand, within PP_4923at 5596.929 kb on + strand, within PP_4923at 5596.930 kb on - strand, within PP_4923at 5597.074 kb on - strand, within PP_4923

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-aminobutyric (N)
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5,593,281 + PP_4921 0.40 -0.1
5,593,282 - PP_4921 0.40 -0.9
5,593,282 - PP_4921 0.40 -0.2
5,593,323 + PP_4921 0.43 -0.1
5,593,323 + PP_4921 0.43 +0.3
5,593,377 + +1.8
5,593,559 + PP_4921 0.61 +0.5
5,593,560 - PP_4921 0.62 -0.2
5,593,560 - PP_4921 0.62 +0.4
5,593,560 - PP_4921 0.62 +0.0
5,593,709 - PP_4921 0.73 +0.2
5,593,832 - PP_4921 0.83 +0.0
5,593,908 - PP_4921 0.89 -0.6
5,594,077 + -0.2
5,594,077 + +0.0
5,594,077 + -0.1
5,594,078 - +0.2
5,594,086 + +0.0
5,594,086 + -0.5
5,594,086 + -0.1
5,594,086 + -0.4
5,594,087 - -0.4
5,594,087 - +0.3
5,594,087 - -0.2
5,594,087 - -0.1
5,594,185 - -0.2
5,594,185 - +0.2
5,594,185 - -0.5
5,594,212 - -0.2
5,594,301 + -0.2
5,594,301 + -0.8
5,594,302 - -0.1
5,594,361 - -0.3
5,594,550 + PP_4922 0.19 -0.4
5,594,551 - PP_4922 0.19 +0.7
5,594,551 - PP_4922 0.19 +0.2
5,594,616 + PP_4922 0.22 +0.1
5,594,616 + PP_4922 0.22 -0.8
5,594,617 - PP_4922 0.22 +0.9
5,594,721 + PP_4922 0.28 -0.7
5,594,722 - PP_4922 0.28 -0.7
5,594,943 + PP_4922 0.40 -0.2
5,594,943 + PP_4922 0.40 -1.9
5,594,943 + PP_4922 0.40 -1.0
5,594,944 - PP_4922 0.40 -0.5
5,594,982 + PP_4922 0.42 -0.9
5,594,983 - PP_4922 0.42 -0.8
5,595,081 + PP_4922 0.47 -1.1
5,595,082 - PP_4922 0.47 -0.2
5,595,082 - PP_4922 0.47 -0.7
5,595,114 + PP_4922 0.49 -0.2
5,595,211 - PP_4922 0.54 -1.0
5,595,402 - PP_4922 0.64 -0.9
5,595,584 + PP_4922 0.74 -0.2
5,595,585 - PP_4922 0.74 -1.0
5,595,585 - PP_4922 0.74 -1.9
5,595,612 + PP_4922 0.75 +0.2
5,595,612 + PP_4922 0.75 -0.3
5,595,612 + PP_4922 0.75 -0.6
5,595,613 - PP_4922 0.75 -1.0
5,595,648 + PP_4922 0.77 -0.5
5,595,648 + PP_4922 0.77 -0.3
5,595,648 + PP_4922 0.77 -1.0
5,595,648 + PP_4922 0.77 -0.4
5,595,648 + PP_4922 0.77 +0.1
5,595,648 + PP_4922 0.77 +0.2
5,595,648 + PP_4922 0.77 -1.0
5,595,649 - PP_4922 0.77 -0.4
5,595,649 - PP_4922 0.77 -1.0
5,595,883 - PP_4922 0.90 -1.0
5,595,883 - PP_4922 0.90 -0.4
5,595,883 - PP_4922 0.90 -0.3
5,595,987 + -0.3
5,595,987 + -0.9
5,595,987 + -1.0
5,595,988 - -0.8
5,595,988 - -0.7
5,595,988 - -0.4
5,595,988 - +0.8
5,596,103 - +0.0
5,596,187 + -0.4
5,596,187 + -1.4
5,596,187 + -0.3
5,596,188 - -0.3
5,596,188 - -0.9
5,596,188 - +0.4
5,596,436 + +0.2
5,596,436 + +0.2
5,596,437 - +0.1
5,596,437 - +0.8
5,596,475 + +0.0
5,596,499 + +0.4
5,596,499 + +1.1
5,596,499 + -0.3
5,596,500 - -0.1
5,596,657 - PP_4923 0.11 -0.3
5,596,929 + PP_4923 0.30 +0.3
5,596,930 - PP_4923 0.30 -0.1
5,597,074 - PP_4923 0.40 +0.7

Or see this region's nucleotide sequence