Strain Fitness in Pseudomonas putida KT2440 around PP_0313

Experiment: 4-aminobutyric (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0312 and PP_0313 are separated by 10 nucleotidesPP_0313 and PP_0314 are separated by 601 nucleotides PP_0312: PP_0312 - electron transfer flavoprotein, alpha subunit, at 374,711 to 375,943 _0312 PP_0313: PP_0313 - putative electron transfer flavoprotein beta subunit, at 375,954 to 376,724 _0313 PP_0314: PP_0314 - conserved protein of unknown function, at 377,326 to 378,057 _0314 Position (kb) 375 376 377Strain fitness (log2 ratio) -1 0 1 2at 374.990 kb on + strand, within PP_0312at 374.990 kb on + strand, within PP_0312at 374.990 kb on + strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 375.185 kb on + strand, within PP_0312at 375.358 kb on + strand, within PP_0312at 375.615 kb on - strand, within PP_0312at 375.737 kb on + strand, within PP_0312at 375.737 kb on + strand, within PP_0312at 375.738 kb on - strand, within PP_0312at 375.738 kb on - strand, within PP_0312at 375.912 kb on - strandat 375.912 kb on - strandat 375.941 kb on + strandat 375.942 kb on - strandat 375.959 kb on + strandat 376.070 kb on + strand, within PP_0313at 376.201 kb on - strand, within PP_0313at 376.201 kb on - strand, within PP_0313at 376.736 kb on + strandat 376.736 kb on + strandat 376.842 kb on - strandat 376.861 kb on - strandat 376.937 kb on + strandat 376.937 kb on + strandat 377.075 kb on - strandat 377.205 kb on + strandat 377.267 kb on + strandat 377.267 kb on + strandat 377.267 kb on + strandat 377.291 kb on - strandat 377.312 kb on + strandat 377.312 kb on + strandat 377.313 kb on - strandat 377.313 kb on - strandat 377.398 kb on + strandat 377.407 kb on + strand, within PP_0314at 377.408 kb on - strand, within PP_0314at 377.423 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.482 kb on + strandat 377.482 kb on + strand, within PP_0314at 377.483 kb on - strand, within PP_0314at 377.510 kb on - strand, within PP_0314at 377.534 kb on + strand, within PP_0314at 377.534 kb on + strand, within PP_0314at 377.549 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.622 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.689 kb on - strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.716 kb on + strand, within PP_0314at 377.716 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.722 kb on - strand, within PP_0314at 377.722 kb on - strand, within PP_0314

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-aminobutyric (N)
remove
374,990 + PP_0312 0.23 -0.1
374,990 + PP_0312 0.23 -0.6
374,990 + PP_0312 0.23 +0.2
374,991 - PP_0312 0.23 +0.3
374,991 - PP_0312 0.23 -0.0
374,991 - PP_0312 0.23 +0.1
374,991 - PP_0312 0.23 +0.1
375,185 + PP_0312 0.38 +0.4
375,358 + PP_0312 0.52 -0.3
375,615 - PP_0312 0.73 +0.0
375,737 + PP_0312 0.83 +0.2
375,737 + PP_0312 0.83 +0.1
375,738 - PP_0312 0.83 +0.5
375,738 - PP_0312 0.83 -0.1
375,912 - -0.5
375,912 - -0.0
375,941 + -0.7
375,942 - -0.0
375,959 + -0.3
376,070 + PP_0313 0.15 -0.0
376,201 - PP_0313 0.32 -1.0
376,201 - PP_0313 0.32 -0.7
376,736 + +0.3
376,736 + +0.6
376,842 - +0.1
376,861 - +0.2
376,937 + +0.1
376,937 + +0.3
377,075 - -0.3
377,205 + -0.8
377,267 + +0.2
377,267 + -0.3
377,267 + +0.8
377,291 - +0.1
377,312 + +0.3
377,312 + +0.8
377,313 - -0.6
377,313 - +0.0
377,398 + -0.5
377,407 + PP_0314 0.11 -0.4
377,408 - PP_0314 0.11 +0.5
377,423 + PP_0314 0.13 +1.0
377,478 + PP_0314 0.21 +0.4
377,478 + PP_0314 0.21 +0.6
377,478 + PP_0314 0.21 -0.6
377,479 - PP_0314 0.21 +0.8
377,479 - PP_0314 0.21 +0.4
377,479 - PP_0314 0.21 +0.8
377,479 - PP_0314 0.21 -0.5
377,482 + +1.8
377,482 + PP_0314 0.21 -0.1
377,483 - PP_0314 0.21 +0.3
377,510 - PP_0314 0.25 +0.6
377,534 + PP_0314 0.28 +0.1
377,534 + PP_0314 0.28 -0.3
377,549 + PP_0314 0.30 +0.4
377,581 + PP_0314 0.35 -0.8
377,581 + PP_0314 0.35 +0.1
377,581 + PP_0314 0.35 -0.1
377,622 + PP_0314 0.40 -0.5
377,684 + PP_0314 0.49 +0.4
377,684 + PP_0314 0.49 -1.1
377,684 + PP_0314 0.49 -0.0
377,685 - PP_0314 0.49 -0.1
377,685 - PP_0314 0.49 +0.7
377,685 - PP_0314 0.49 +0.4
377,689 - PP_0314 0.50 +0.0
377,690 + PP_0314 0.50 -0.8
377,690 + PP_0314 0.50 -0.5
377,690 + PP_0314 0.50 +0.2
377,690 + PP_0314 0.50 +0.6
377,690 + PP_0314 0.50 -0.5
377,691 - PP_0314 0.50 -0.4
377,691 - PP_0314 0.50 -0.1
377,691 - PP_0314 0.50 -0.3
377,716 + PP_0314 0.53 -0.1
377,716 + PP_0314 0.53 +0.1
377,721 + PP_0314 0.54 -0.6
377,721 + PP_0314 0.54 -0.2
377,721 + PP_0314 0.54 +0.5
377,722 - PP_0314 0.54 -0.8
377,722 - PP_0314 0.54 -0.3

Or see this region's nucleotide sequence